miRNA display CGI


Results 61 - 80 of 187 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28726 5' -51.2 NC_006146.1 + 113495 0.66 0.992564
Target:  5'- gUAGAGgCGuGC-GUCGGCCGGGCa-- -3'
miRNA:   3'- -GUUUCgGUuUGaCAGCCGGUUCGagg -5'
28726 5' -51.2 NC_006146.1 + 113039 0.69 0.954724
Target:  5'- --cGGCCAGGacGUCGGCCucgGGgUCCa -3'
miRNA:   3'- guuUCGGUUUgaCAGCCGGu--UCgAGG- -5'
28726 5' -51.2 NC_006146.1 + 112853 0.67 0.981838
Target:  5'- aCAGguAGCCGGcggagacuaugcGCUcGUaGGCCGGGCUCUg -3'
miRNA:   3'- -GUU--UCGGUU------------UGA-CAgCCGGUUCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 111908 0.69 0.954724
Target:  5'- gGGAGgCAGA-UGUUGGCCAGGUUgCa -3'
miRNA:   3'- gUUUCgGUUUgACAGCCGGUUCGAgG- -5'
28726 5' -51.2 NC_006146.1 + 111627 0.7 0.931491
Target:  5'- --cAGCCcagguccgcgaAGAC-GUCGGCCAGGC-CCu -3'
miRNA:   3'- guuUCGG-----------UUUGaCAGCCGGUUCGaGG- -5'
28726 5' -51.2 NC_006146.1 + 109995 0.7 0.931491
Target:  5'- cUAAGGCCGggAugUGg-GGCCucaGGGCUCCg -3'
miRNA:   3'- -GUUUCGGU--UugACagCCGG---UUCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 109322 0.74 0.769207
Target:  5'- gGAAGCCu-GCUGcaCGGCCGagccaaacAGCUCCu -3'
miRNA:   3'- gUUUCGGuuUGACa-GCCGGU--------UCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 108886 0.69 0.946182
Target:  5'- aGAGGCCGAGCgccgCGGCCA-GCgagUCa -3'
miRNA:   3'- gUUUCGGUUUGaca-GCCGGUuCGa--GG- -5'
28726 5' -51.2 NC_006146.1 + 103871 0.68 0.977281
Target:  5'- --cGGCC-GACUGUCGGCUcccggacacgcGGCUCa -3'
miRNA:   3'- guuUCGGuUUGACAGCCGGu----------UCGAGg -5'
28726 5' -51.2 NC_006146.1 + 103799 0.66 0.993554
Target:  5'- -cGGGaCCAAaguACUcGUCuGCCAagAGCUCCg -3'
miRNA:   3'- guUUC-GGUU---UGA-CAGcCGGU--UCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 103745 0.69 0.950576
Target:  5'- cCGGAcGCCGcGCUcaGgagCGGCCAgcGGCUCCc -3'
miRNA:   3'- -GUUU-CGGUuUGA--Ca--GCCGGU--UCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 103140 0.74 0.749513
Target:  5'- --uGGCCGAGCUGggggaGGUCuuuGGCUCCu -3'
miRNA:   3'- guuUCGGUUUGACag---CCGGu--UCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 102857 0.66 0.994436
Target:  5'- --cAGCCAGGgcagccgccacCUGgucgUGGCCGGGCcCCa -3'
miRNA:   3'- guuUCGGUUU-----------GACa---GCCGGUUCGaGG- -5'
28726 5' -51.2 NC_006146.1 + 102035 0.76 0.656611
Target:  5'- uCAGGGCCAGGCUGUCG-CCAGccuGCUUg -3'
miRNA:   3'- -GUUUCGGUUUGACAGCcGGUU---CGAGg -5'
28726 5' -51.2 NC_006146.1 + 101419 0.67 0.979654
Target:  5'- aCGAGGCgGucuuCgucUCGGCCAAGCUgCa -3'
miRNA:   3'- -GUUUCGgUuu--Gac-AGCCGGUUCGAgG- -5'
28726 5' -51.2 NC_006146.1 + 99385 0.7 0.931491
Target:  5'- uGAGGCCcagGAGCgaGUCGGCCAGGggggugCCg -3'
miRNA:   3'- gUUUCGG---UUUGa-CAGCCGGUUCga----GG- -5'
28726 5' -51.2 NC_006146.1 + 98952 0.71 0.908345
Target:  5'- aCGAAGCCcaggacAAACUcGUCGGCaUAGGC-CCa -3'
miRNA:   3'- -GUUUCGG------UUUGA-CAGCCG-GUUCGaGG- -5'
28726 5' -51.2 NC_006146.1 + 98334 0.66 0.994436
Target:  5'- aCGGGGCCGGGCg--CGGCCcgucccGgUCCa -3'
miRNA:   3'- -GUUUCGGUUUGacaGCCGGuu----CgAGG- -5'
28726 5' -51.2 NC_006146.1 + 95594 0.66 0.992564
Target:  5'- uGGGGCgGGGcCUGUaaguaaGGCCAAGCUa- -3'
miRNA:   3'- gUUUCGgUUU-GACAg-----CCGGUUCGAgg -5'
28726 5' -51.2 NC_006146.1 + 95505 0.71 0.894578
Target:  5'- gAAGGCCuccauauccggGAGCUGUCgggugcggcgccuGGCCAGGgUCCc -3'
miRNA:   3'- gUUUCGG-----------UUUGACAG-------------CCGGUUCgAGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.