miRNA display CGI


Results 161 - 180 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28726 5' -51.2 NC_006146.1 + 20707 0.67 0.987339
Target:  5'- gCAAGGCCAuuaagaAGCUGcuggCGGCCugcGAGgaCCc -3'
miRNA:   3'- -GUUUCGGU------UUGACa---GCCGG---UUCgaGG- -5'
28726 5' -51.2 NC_006146.1 + 19264 0.67 0.987339
Target:  5'- ---cGCCAGGCgggGUcCGGCCu--CUCCu -3'
miRNA:   3'- guuuCGGUUUGa--CA-GCCGGuucGAGG- -5'
28726 5' -51.2 NC_006146.1 + 19129 0.78 0.582779
Target:  5'- gGGAGUCAGAgaGUCGGCCuAGGC-CCg -3'
miRNA:   3'- gUUUCGGUUUgaCAGCCGG-UUCGaGG- -5'
28726 5' -51.2 NC_006146.1 + 19021 0.66 0.988853
Target:  5'- gCGAGGCUggguGGCUGggcaGGCCGGGuCUCg -3'
miRNA:   3'- -GUUUCGGu---UUGACag--CCGGUUC-GAGg -5'
28726 5' -51.2 NC_006146.1 + 18994 0.71 0.895259
Target:  5'- cCGGAGCCAGACcccagUGggGGCCcccucGAGUUCCa -3'
miRNA:   3'- -GUUUCGGUUUG-----ACagCCGG-----UUCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 18784 0.69 0.96086
Target:  5'- -cAGGCCAGGCcaccuuagaccCGGCCAGGCcCCa -3'
miRNA:   3'- guUUCGGUUUGaca--------GCCGGUUCGaGG- -5'
28726 5' -51.2 NC_006146.1 + 16186 0.67 0.987339
Target:  5'- ---cGCCAGGCgggGUcCGGCCu--CUCCu -3'
miRNA:   3'- guuuCGGUUUGa--CA-GCCGGuucGAGG- -5'
28726 5' -51.2 NC_006146.1 + 16167 0.66 0.991457
Target:  5'- gGAAGCCGAGCguUGUCuugcugcuGGCCGcccuggugGGCUgCa -3'
miRNA:   3'- gUUUCGGUUUG--ACAG--------CCGGU--------UCGAgG- -5'
28726 5' -51.2 NC_006146.1 + 16051 0.78 0.582779
Target:  5'- gGGAGUCAGAgaGUCGGCCuAGGC-CCg -3'
miRNA:   3'- gUUUCGGUUUgaCAGCCGG-UUCGaGG- -5'
28726 5' -51.2 NC_006146.1 + 15941 0.66 0.993554
Target:  5'- -uGGGCgAGGCUGggUGGCUggGCaggCCg -3'
miRNA:   3'- guUUCGgUUUGACa-GCCGGuuCGa--GG- -5'
28726 5' -51.2 NC_006146.1 + 15706 0.69 0.96086
Target:  5'- -cAGGCCAGGCcaccuuagaccCGGCCAGGCcCCa -3'
miRNA:   3'- guUUCGGUUUGaca--------GCCGGUUCGaGG- -5'
28726 5' -51.2 NC_006146.1 + 15184 0.66 0.994436
Target:  5'- gAAGGCC-GACUGcgCGGCCGc-CUUCa -3'
miRNA:   3'- gUUUCGGuUUGACa-GCCGGUucGAGG- -5'
28726 5' -51.2 NC_006146.1 + 14758 0.66 0.993554
Target:  5'- aCGAGGUCAGGCa---GGCgGGGCUCg -3'
miRNA:   3'- -GUUUCGGUUUGacagCCGgUUCGAGg -5'
28726 5' -51.2 NC_006146.1 + 14164 0.66 0.994436
Target:  5'- uGGAGCUGAGC-GUCuGcGCCAGGCUg- -3'
miRNA:   3'- gUUUCGGUUUGaCAG-C-CGGUUCGAgg -5'
28726 5' -51.2 NC_006146.1 + 13566 0.67 0.987339
Target:  5'- ---cGCCGGGCUGcgcaagcaGGCCGggGGCUCa -3'
miRNA:   3'- guuuCGGUUUGACag------CCGGU--UCGAGg -5'
28726 5' -51.2 NC_006146.1 + 13108 0.67 0.987339
Target:  5'- ---cGCCAGGCgggGUcCGGCCu--CUCCu -3'
miRNA:   3'- guuuCGGUUUGa--CA-GCCGGuucGAGG- -5'
28726 5' -51.2 NC_006146.1 + 12973 0.77 0.603804
Target:  5'- uGGAGUCAGAgaGUCGGCCuAGGC-CCg -3'
miRNA:   3'- gUUUCGGUUUgaCAGCCGG-UUCGaGG- -5'
28726 5' -51.2 NC_006146.1 + 12862 0.68 0.97471
Target:  5'- uGGGGCgAGGCUGggUGGCUggGCaggCCg -3'
miRNA:   3'- gUUUCGgUUUGACa-GCCGGuuCGa--GG- -5'
28726 5' -51.2 NC_006146.1 + 12627 0.69 0.96086
Target:  5'- -cAGGCCAGGCcaccuuagaccCGGCCAGGCcCCa -3'
miRNA:   3'- guUUCGGUUUGaca--------GCCGGUUCGaGG- -5'
28726 5' -51.2 NC_006146.1 + 11443 0.69 0.946182
Target:  5'- --uGGCCAAGgUGgCGGCCcucaagGAGUUCCc -3'
miRNA:   3'- guuUCGGUUUgACaGCCGG------UUCGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.