miRNA display CGI


Results 81 - 100 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28726 5' -51.2 NC_006146.1 + 55500 0.68 0.974976
Target:  5'- --cGGCCGccAGCUGccuccugcacgcgagCGGCCAgggccuccAGCUCCg -3'
miRNA:   3'- guuUCGGU--UUGACa--------------GCCGGU--------UCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 54305 0.67 0.979654
Target:  5'- gGAAGC--GACgUGU-GGCCAGGCUCa -3'
miRNA:   3'- gUUUCGguUUG-ACAgCCGGUUCGAGg -5'
28726 5' -51.2 NC_006146.1 + 101419 0.67 0.979654
Target:  5'- aCGAGGCgGucuuCgucUCGGCCAAGCUgCa -3'
miRNA:   3'- -GUUUCGgUuu--Gac-AGCCGGUUCGAgG- -5'
28726 5' -51.2 NC_006146.1 + 38061 0.67 0.981838
Target:  5'- cCAGAGUCAGGCUGU-GGCCAAa---- -3'
miRNA:   3'- -GUUUCGGUUUGACAgCCGGUUcgagg -5'
28726 5' -51.2 NC_006146.1 + 47526 0.67 0.983648
Target:  5'- --cAGCCAggUUGcggggccccCGGCCAgcgccagAGCUCCc -3'
miRNA:   3'- guuUCGGUuuGACa--------GCCGGU-------UCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 75635 0.67 0.987339
Target:  5'- gAAGGCCAuauAGCUugcagaGGCCAAGgaCCg -3'
miRNA:   3'- gUUUCGGU---UUGAcag---CCGGUUCgaGG- -5'
28726 5' -51.2 NC_006146.1 + 13108 0.67 0.987339
Target:  5'- ---cGCCAGGCgggGUcCGGCCu--CUCCu -3'
miRNA:   3'- guuuCGGUUUGa--CA-GCCGGuucGAGG- -5'
28726 5' -51.2 NC_006146.1 + 155723 0.69 0.962299
Target:  5'- --cGGCCGcGCaGUCGGCCuucAGCgcuUCCa -3'
miRNA:   3'- guuUCGGUuUGaCAGCCGGu--UCG---AGG- -5'
28726 5' -51.2 NC_006146.1 + 21862 0.69 0.96086
Target:  5'- -cAGGCCAGGCcaccuuagaccCGGCCAGGCcCCa -3'
miRNA:   3'- guUUCGGUUUGaca--------GCCGGUUCGaGG- -5'
28726 5' -51.2 NC_006146.1 + 47640 0.69 0.95863
Target:  5'- -cGAGCCGucuCUGgccgCGGCCcGGC-CCa -3'
miRNA:   3'- guUUCGGUuu-GACa---GCCGGuUCGaGG- -5'
28726 5' -51.2 NC_006146.1 + 19021 0.66 0.988853
Target:  5'- gCGAGGCUggguGGCUGggcaGGCCGGGuCUCg -3'
miRNA:   3'- -GUUUCGGu---UUGACag--CCGGUUC-GAGg -5'
28726 5' -51.2 NC_006146.1 + 78561 0.66 0.988853
Target:  5'- -cGAGCCGccccauaucAGCUGccccaGGCCGGGC-CCg -3'
miRNA:   3'- guUUCGGU---------UUGACag---CCGGUUCGaGG- -5'
28726 5' -51.2 NC_006146.1 + 153388 0.66 0.990223
Target:  5'- --uGGCCGGAUUGUUGaggguGCCAagggAGUUCCc -3'
miRNA:   3'- guuUCGGUUUGACAGC-----CGGU----UCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 139073 0.66 0.990223
Target:  5'- gGAAGCUGGACU-UUGGCCAcgGGCcucgCCu -3'
miRNA:   3'- gUUUCGGUUUGAcAGCCGGU--UCGa---GG- -5'
28726 5' -51.2 NC_006146.1 + 123498 0.66 0.992564
Target:  5'- --uGGUCAucAGCaUGgCGGCCAGacGCUCCa -3'
miRNA:   3'- guuUCGGU--UUG-ACaGCCGGUU--CGAGG- -5'
28726 5' -51.2 NC_006146.1 + 57868 0.71 0.914513
Target:  5'- cCGAGGCCGAcgucCUGcCGGgCGucuGCUCCa -3'
miRNA:   3'- -GUUUCGGUUu---GACaGCCgGUu--CGAGG- -5'
28726 5' -51.2 NC_006146.1 + 109995 0.7 0.931491
Target:  5'- cUAAGGCCGggAugUGg-GGCCucaGGGCUCCg -3'
miRNA:   3'- -GUUUCGGU--UugACagCCGG---UUCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 67037 0.7 0.941537
Target:  5'- gGGAGCC-GACaGUCGGCCGGGaCggagaCCa -3'
miRNA:   3'- gUUUCGGuUUGaCAGCCGGUUC-Ga----GG- -5'
28726 5' -51.2 NC_006146.1 + 24940 0.69 0.945273
Target:  5'- -cAGGCCAGGCcccuuagaccCGGCCAGGCcCCa -3'
miRNA:   3'- guUUCGGUUUGaca-------GCCGGUUCGaGG- -5'
28726 5' -51.2 NC_006146.1 + 68750 0.69 0.954724
Target:  5'- gGAGGCCcag--GU-GGCCAAGCUUCa -3'
miRNA:   3'- gUUUCGGuuugaCAgCCGGUUCGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.