miRNA display CGI


Results 121 - 140 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28726 5' -51.2 NC_006146.1 + 131701 0.71 0.914513
Target:  5'- cCAAGGCCGAcuACUG-CGGCCu-GCUg- -3'
miRNA:   3'- -GUUUCGGUU--UGACaGCCGGuuCGAgg -5'
28726 5' -51.2 NC_006146.1 + 29607 0.7 0.920427
Target:  5'- --cAGCCAGGCUGaacCcGCCAAuGCUCCc -3'
miRNA:   3'- guuUCGGUUUGACa--GcCGGUU-CGAGG- -5'
28726 5' -51.2 NC_006146.1 + 123259 0.7 0.936641
Target:  5'- -uGGGCCGGGCcG-CGGCCAgagacGGCUCg -3'
miRNA:   3'- guUUCGGUUUGaCaGCCGGU-----UCGAGg -5'
28726 5' -51.2 NC_006146.1 + 120538 0.7 0.941537
Target:  5'- --cGGCgGGACUGcUGGCCAAGaUCCc -3'
miRNA:   3'- guuUCGgUUUGACaGCCGGUUCgAGG- -5'
28726 5' -51.2 NC_006146.1 + 11443 0.69 0.946182
Target:  5'- --uGGCCAAGgUGgCGGCCcucaagGAGUUCCc -3'
miRNA:   3'- guuUCGGUUUgACaGCCGG------UUCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 45657 0.69 0.946182
Target:  5'- aCAGAGUCcGGCgccaGGCCAguGGCUCCc -3'
miRNA:   3'- -GUUUCGGuUUGacagCCGGU--UCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 108886 0.69 0.946182
Target:  5'- aGAGGCCGAGCgccgCGGCCA-GCgagUCa -3'
miRNA:   3'- gUUUCGGUUUGaca-GCCGGUuCGa--GG- -5'
28726 5' -51.2 NC_006146.1 + 117720 0.69 0.946182
Target:  5'- cCAAGGCCGGGgccgaGGCCGAGCcuUCCg -3'
miRNA:   3'- -GUUUCGGUUUgacagCCGGUUCG--AGG- -5'
28726 5' -51.2 NC_006146.1 + 103745 0.69 0.950576
Target:  5'- cCGGAcGCCGcGCUcaGgagCGGCCAgcGGCUCCc -3'
miRNA:   3'- -GUUU-CGGUuUGA--Ca--GCCGGU--UCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 111908 0.69 0.954724
Target:  5'- gGGAGgCAGA-UGUUGGCCAGGUUgCa -3'
miRNA:   3'- gUUUCgGUUUgACAGCCGGUUCGAgG- -5'
28726 5' -51.2 NC_006146.1 + 151569 0.71 0.888346
Target:  5'- gCGAGGCCGGGCa---GGCCGGGCaggCCg -3'
miRNA:   3'- -GUUUCGGUUUGacagCCGGUUCGa--GG- -5'
28726 5' -51.2 NC_006146.1 + 151807 0.67 0.98384
Target:  5'- cCAAGGCCAccgGGCgg--GGCCAGGgcCUCCa -3'
miRNA:   3'- -GUUUCGGU---UUGacagCCGGUUC--GAGG- -5'
28726 5' -51.2 NC_006146.1 + 111627 0.7 0.931491
Target:  5'- --cAGCCcagguccgcgaAGAC-GUCGGCCAGGC-CCu -3'
miRNA:   3'- guuUCGG-----------UUUGaCAGCCGGUUCGaGG- -5'
28726 5' -51.2 NC_006146.1 + 20707 0.67 0.987339
Target:  5'- gCAAGGCCAuuaagaAGCUGcuggCGGCCugcGAGgaCCc -3'
miRNA:   3'- -GUUUCGGU------UUGACa---GCCGG---UUCgaGG- -5'
28726 5' -51.2 NC_006146.1 + 74572 0.67 0.985671
Target:  5'- ----aCCGGGCUGUCgaaGGUCAcuGCUCCg -3'
miRNA:   3'- guuucGGUUUGACAG---CCGGUu-CGAGG- -5'
28726 5' -51.2 NC_006146.1 + 60789 0.67 0.985671
Target:  5'- gGGAGCCGGACcagGUCcagGGCCu-GgUCCg -3'
miRNA:   3'- gUUUCGGUUUGa--CAG---CCGGuuCgAGG- -5'
28726 5' -51.2 NC_006146.1 + 73508 0.67 0.98514
Target:  5'- gCGGGGUCAcGCgcaggcuuacuuuuUGcaUGGCCAGGCUCCg -3'
miRNA:   3'- -GUUUCGGUuUG--------------ACa-GCCGGUUCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 64194 0.67 0.98384
Target:  5'- aGGAGUugCAAGgUGUC-GCgGAGCUCCg -3'
miRNA:   3'- gUUUCG--GUUUgACAGcCGgUUCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 157963 0.67 0.98384
Target:  5'- cCAAGGCCAccgGGCgg--GGCCAGGgcCUCCa -3'
miRNA:   3'- -GUUUCGGU---UUGacagCCGGUUC--GAGG- -5'
28726 5' -51.2 NC_006146.1 + 154885 0.67 0.98384
Target:  5'- cCAAGGCCAccgGGCgg--GGCCAGGgcCUCCa -3'
miRNA:   3'- -GUUUCGGU---UUGacagCCGGUUC--GAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.