Results 141 - 160 of 187 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28726 | 5' | -51.2 | NC_006146.1 | + | 154647 | 0.71 | 0.888346 |
Target: 5'- gCGAGGCCGGGCa---GGCCGGGCaggCCg -3' miRNA: 3'- -GUUUCGGUUUGacagCCGGUUCGa--GG- -5' |
|||||||
28726 | 5' | -51.2 | NC_006146.1 | + | 168639 | 1.03 | 0.020065 |
Target: 5'- uCAAAGCCAAACUGUCGGCCAAGC-CCa -3' miRNA: 3'- -GUUUCGGUUUGACAGCCGGUUCGaGG- -5' |
|||||||
28726 | 5' | -51.2 | NC_006146.1 | + | 89072 | 0.75 | 0.708886 |
Target: 5'- uGGAGCCu-GCUGguguugUGGCCAcGGCUCCu -3' miRNA: 3'- gUUUCGGuuUGACa-----GCCGGU-UCGAGG- -5' |
|||||||
28726 | 5' | -51.2 | NC_006146.1 | + | 102035 | 0.76 | 0.656611 |
Target: 5'- uCAGGGCCAGGCUGUCG-CCAGccuGCUUg -3' miRNA: 3'- -GUUUCGGUUUGACAGCcGGUU---CGAGg -5' |
|||||||
28726 | 5' | -51.2 | NC_006146.1 | + | 120538 | 0.7 | 0.941537 |
Target: 5'- --cGGCgGGACUGcUGGCCAAGaUCCc -3' miRNA: 3'- guuUCGgUUUGACaGCCGGUUCgAGG- -5' |
|||||||
28726 | 5' | -51.2 | NC_006146.1 | + | 11443 | 0.69 | 0.946182 |
Target: 5'- --uGGCCAAGgUGgCGGCCcucaagGAGUUCCc -3' miRNA: 3'- guuUCGGUUUgACaGCCGG------UUCGAGG- -5' |
|||||||
28726 | 5' | -51.2 | NC_006146.1 | + | 45657 | 0.69 | 0.946182 |
Target: 5'- aCAGAGUCcGGCgccaGGCCAguGGCUCCc -3' miRNA: 3'- -GUUUCGGuUUGacagCCGGU--UCGAGG- -5' |
|||||||
28726 | 5' | -51.2 | NC_006146.1 | + | 76500 | 0.67 | 0.979654 |
Target: 5'- ---uGCCAAGCcucaCGGCCcacaccuGGCUCCa -3' miRNA: 3'- guuuCGGUUUGaca-GCCGGu------UCGAGG- -5' |
|||||||
28726 | 5' | -51.2 | NC_006146.1 | + | 103871 | 0.68 | 0.977281 |
Target: 5'- --cGGCC-GACUGUCGGCUcccggacacgcGGCUCa -3' miRNA: 3'- guuUCGGuUUGACAGCCGGu----------UCGAGg -5' |
|||||||
28726 | 5' | -51.2 | NC_006146.1 | + | 64156 | 0.68 | 0.97471 |
Target: 5'- uCAGGGCCucGgaGUCuGCCAGGCUg- -3' miRNA: 3'- -GUUUCGGuuUgaCAGcCGGUUCGAgg -5' |
|||||||
28726 | 5' | -51.2 | NC_006146.1 | + | 115410 | 0.68 | 0.971933 |
Target: 5'- gGAGGCa--GCUGgCGGCCGGGcCUCg -3' miRNA: 3'- gUUUCGguuUGACaGCCGGUUC-GAGg -5' |
|||||||
28726 | 5' | -51.2 | NC_006146.1 | + | 123028 | 0.68 | 0.968944 |
Target: 5'- cCGAGGCCGAGg---CGGCCcAGgUCCg -3' miRNA: 3'- -GUUUCGGUUUgacaGCCGGuUCgAGG- -5' |
|||||||
28726 | 5' | -51.2 | NC_006146.1 | + | 90417 | 0.68 | 0.968944 |
Target: 5'- uCAAGGCCGGAUUGcCGcaacguGUCAuGGCUCCc -3' miRNA: 3'- -GUUUCGGUUUGACaGC------CGGU-UCGAGG- -5' |
|||||||
28726 | 5' | -51.2 | NC_006146.1 | + | 77546 | 0.69 | 0.957868 |
Target: 5'- -cGGGCCAcguguacguggcGCUGUCcagGGCCAGGCacUCCa -3' miRNA: 3'- guUUCGGUu-----------UGACAG---CCGGUUCG--AGG- -5' |
|||||||
28726 | 5' | -51.2 | NC_006146.1 | + | 7722 | 0.69 | 0.954724 |
Target: 5'- aGAAGCCAAgccACUGccCGGUCAaagaagAGCUCa -3' miRNA: 3'- gUUUCGGUU---UGACa-GCCGGU------UCGAGg -5' |
|||||||
28726 | 5' | -51.2 | NC_006146.1 | + | 113039 | 0.69 | 0.954724 |
Target: 5'- --cGGCCAGGacGUCGGCCucgGGgUCCa -3' miRNA: 3'- guuUCGGUUUgaCAGCCGGu--UCgAGG- -5' |
|||||||
28726 | 5' | -51.2 | NC_006146.1 | + | 111908 | 0.69 | 0.954724 |
Target: 5'- gGGAGgCAGA-UGUUGGCCAGGUUgCa -3' miRNA: 3'- gUUUCgGUUUgACAGCCGGUUCGAgG- -5' |
|||||||
28726 | 5' | -51.2 | NC_006146.1 | + | 103745 | 0.69 | 0.950576 |
Target: 5'- cCGGAcGCCGcGCUcaGgagCGGCCAgcGGCUCCc -3' miRNA: 3'- -GUUU-CGGUuUGA--Ca--GCCGGU--UCGAGG- -5' |
|||||||
28726 | 5' | -51.2 | NC_006146.1 | + | 117720 | 0.69 | 0.946182 |
Target: 5'- cCAAGGCCGGGgccgaGGCCGAGCcuUCCg -3' miRNA: 3'- -GUUUCGGUUUgacagCCGGUUCG--AGG- -5' |
|||||||
28726 | 5' | -51.2 | NC_006146.1 | + | 108886 | 0.69 | 0.946182 |
Target: 5'- aGAGGCCGAGCgccgCGGCCA-GCgagUCa -3' miRNA: 3'- gUUUCGGUUUGaca-GCCGGUuCGa--GG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home