Results 161 - 180 of 187 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28726 | 5' | -51.2 | NC_006146.1 | + | 18994 | 0.71 | 0.895259 |
Target: 5'- cCGGAGCCAGACcccagUGggGGCCcccucGAGUUCCa -3' miRNA: 3'- -GUUUCGGUUUG-----ACagCCGG-----UUCGAGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 61192 | 0.71 | 0.908345 |
Target: 5'- ---uGCCAGACacgGUCauGGCgGAGCUCUg -3' miRNA: 3'- guuuCGGUUUGa--CAG--CCGgUUCGAGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 103745 | 0.69 | 0.950576 |
Target: 5'- cCGGAcGCCGcGCUcaGgagCGGCCAgcGGCUCCc -3' miRNA: 3'- -GUUU-CGGUuUGA--Ca--GCCGGU--UCGAGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 111908 | 0.69 | 0.954724 |
Target: 5'- gGGAGgCAGA-UGUUGGCCAGGUUgCa -3' miRNA: 3'- gUUUCgGUUUgACAGCCGGUUCGAgG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 113039 | 0.69 | 0.954724 |
Target: 5'- --cGGCCAGGacGUCGGCCucgGGgUCCa -3' miRNA: 3'- guuUCGGUUUgaCAGCCGGu--UCgAGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 7722 | 0.69 | 0.954724 |
Target: 5'- aGAAGCCAAgccACUGccCGGUCAaagaagAGCUCa -3' miRNA: 3'- gUUUCGGUU---UGACa-GCCGGU------UCGAGg -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 77546 | 0.69 | 0.957868 |
Target: 5'- -cGGGCCAcguguacguggcGCUGUCcagGGCCAGGCacUCCa -3' miRNA: 3'- guUUCGGUu-----------UGACAG---CCGGUUCG--AGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 90417 | 0.68 | 0.968944 |
Target: 5'- uCAAGGCCGGAUUGcCGcaacguGUCAuGGCUCCc -3' miRNA: 3'- -GUUUCGGUUUGACaGC------CGGU-UCGAGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 123028 | 0.68 | 0.968944 |
Target: 5'- cCGAGGCCGAGg---CGGCCcAGgUCCg -3' miRNA: 3'- -GUUUCGGUUUgacaGCCGGuUCgAGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 115410 | 0.68 | 0.971933 |
Target: 5'- gGAGGCa--GCUGgCGGCCGGGcCUCg -3' miRNA: 3'- gUUUCGguuUGACaGCCGGUUC-GAGg -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 117720 | 0.69 | 0.946182 |
Target: 5'- cCAAGGCCGGGgccgaGGCCGAGCcuUCCg -3' miRNA: 3'- -GUUUCGGUUUgacagCCGGUUCG--AGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 108886 | 0.69 | 0.946182 |
Target: 5'- aGAGGCCGAGCgccgCGGCCA-GCgagUCa -3' miRNA: 3'- gUUUCGGUUUGaca-GCCGGUuCGa--GG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 88692 | 0.71 | 0.914513 |
Target: 5'- uGGAGCCAgugggucuuggGACUGUugUGGCUGcGGCUCCc -3' miRNA: 3'- gUUUCGGU-----------UUGACA--GCCGGU-UCGAGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 131701 | 0.71 | 0.914513 |
Target: 5'- cCAAGGCCGAcuACUG-CGGCCu-GCUg- -3' miRNA: 3'- -GUUUCGGUU--UGACaGCCGGuuCGAgg -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 29607 | 0.7 | 0.920427 |
Target: 5'- --cAGCCAGGCUGaacCcGCCAAuGCUCCc -3' miRNA: 3'- guuUCGGUUUGACa--GcCGGUU-CGAGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 111627 | 0.7 | 0.931491 |
Target: 5'- --cAGCCcagguccgcgaAGAC-GUCGGCCAGGC-CCu -3' miRNA: 3'- guuUCGG-----------UUUGaCAGCCGGUUCGaGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 123259 | 0.7 | 0.936641 |
Target: 5'- -uGGGCCGGGCcG-CGGCCAgagacGGCUCg -3' miRNA: 3'- guUUCGGUUUGaCaGCCGGU-----UCGAGg -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 120538 | 0.7 | 0.941537 |
Target: 5'- --cGGCgGGACUGcUGGCCAAGaUCCc -3' miRNA: 3'- guuUCGgUUUGACaGCCGGUUCgAGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 11443 | 0.69 | 0.946182 |
Target: 5'- --uGGCCAAGgUGgCGGCCcucaagGAGUUCCc -3' miRNA: 3'- guuUCGGUUUgACaGCCGG------UUCGAGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 45657 | 0.69 | 0.946182 |
Target: 5'- aCAGAGUCcGGCgccaGGCCAguGGCUCCc -3' miRNA: 3'- -GUUUCGGuUUGacagCCGGU--UCGAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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