miRNA display CGI


Results 1 - 20 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28726 5' -51.2 NC_006146.1 + 15184 0.66 0.994436
Target:  5'- gAAGGCC-GACUGcgCGGCCGc-CUUCa -3'
miRNA:   3'- gUUUCGGuUUGACa-GCCGGUucGAGG- -5'
28726 5' -51.2 NC_006146.1 + 40027 0.66 0.992564
Target:  5'- gGGGGCCu-GCUGggGGCCGuAGCcgacUCCg -3'
miRNA:   3'- gUUUCGGuuUGACagCCGGU-UCG----AGG- -5'
28726 5' -51.2 NC_006146.1 + 91209 0.66 0.991457
Target:  5'- ---cGCCugcCUGUUGGCCGGuCUCUg -3'
miRNA:   3'- guuuCGGuuuGACAGCCGGUUcGAGG- -5'
28726 5' -51.2 NC_006146.1 + 68020 0.66 0.991457
Target:  5'- -uAAGCgCAAACUGgggccCGGCCAcgaccagguggcGGCUgCCc -3'
miRNA:   3'- guUUCG-GUUUGACa----GCCGGU------------UCGA-GG- -5'
28726 5' -51.2 NC_006146.1 + 16167 0.66 0.991457
Target:  5'- gGAAGCCGAGCguUGUCuugcugcuGGCCGcccuggugGGCUgCa -3'
miRNA:   3'- gUUUCGGUUUG--ACAG--------CCGGU--------UCGAgG- -5'
28726 5' -51.2 NC_006146.1 + 130064 0.66 0.990223
Target:  5'- aAAGGUCAAGC--UCGGCCGGGaacaCCa -3'
miRNA:   3'- gUUUCGGUUUGacAGCCGGUUCga--GG- -5'
28726 5' -51.2 NC_006146.1 + 61591 0.66 0.990223
Target:  5'- aAGAGCC-GGCUGcagCGGCCGcGGCcggggCCg -3'
miRNA:   3'- gUUUCGGuUUGACa--GCCGGU-UCGa----GG- -5'
28726 5' -51.2 NC_006146.1 + 122564 0.66 0.990223
Target:  5'- --uGGCCAGACUGgacGCCuGGC-CCa -3'
miRNA:   3'- guuUCGGUUUGACagcCGGuUCGaGG- -5'
28726 5' -51.2 NC_006146.1 + 127420 0.66 0.988709
Target:  5'- cCGGAGCCGGugUcaaCGGCCGccgaggaGGCUgCCg -3'
miRNA:   3'- -GUUUCGGUUugAca-GCCGGU-------UCGA-GG- -5'
28726 5' -51.2 NC_006146.1 + 88803 0.66 0.992564
Target:  5'- uGGAGCCu-GCUGggcauguuuggcUgGGCCugAGGCUCCc -3'
miRNA:   3'- gUUUCGGuuUGAC------------AgCCGG--UUCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 95594 0.66 0.992564
Target:  5'- uGGGGCgGGGcCUGUaaguaaGGCCAAGCUa- -3'
miRNA:   3'- gUUUCGgUUU-GACAg-----CCGGUUCGAgg -5'
28726 5' -51.2 NC_006146.1 + 59863 0.66 0.992564
Target:  5'- uCAGGGagGAGgUGUC-GCCAucAGCUCCg -3'
miRNA:   3'- -GUUUCggUUUgACAGcCGGU--UCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 14164 0.66 0.994436
Target:  5'- uGGAGCUGAGC-GUCuGcGCCAGGCUg- -3'
miRNA:   3'- gUUUCGGUUUGaCAG-C-CGGUUCGAgg -5'
28726 5' -51.2 NC_006146.1 + 39654 0.66 0.994436
Target:  5'- -uGGGCUgAGACUGccUUGGCCuuggaggcggcGGGCUCCu -3'
miRNA:   3'- guUUCGG-UUUGAC--AGCCGG-----------UUCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 14758 0.66 0.993554
Target:  5'- aCGAGGUCAGGCa---GGCgGGGCUCg -3'
miRNA:   3'- -GUUUCGGUUUGacagCCGgUUCGAGg -5'
28726 5' -51.2 NC_006146.1 + 138215 0.66 0.993554
Target:  5'- uGAGGCUggGCUGaCGGggaUAAGCaUCCc -3'
miRNA:   3'- gUUUCGGuuUGACaGCCg--GUUCG-AGG- -5'
28726 5' -51.2 NC_006146.1 + 165789 0.66 0.992564
Target:  5'- uCAGAGCCAcGgUGgcaCGGCCGgcuaggggGGCgUCCc -3'
miRNA:   3'- -GUUUCGGUuUgACa--GCCGGU--------UCG-AGG- -5'
28726 5' -51.2 NC_006146.1 + 132622 0.66 0.992564
Target:  5'- aAGGGCCGGcAgUGU-GGCCc-GCUCCa -3'
miRNA:   3'- gUUUCGGUU-UgACAgCCGGuuCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 113495 0.66 0.992564
Target:  5'- gUAGAGgCGuGC-GUCGGCCGGGCa-- -3'
miRNA:   3'- -GUUUCgGUuUGaCAGCCGGUUCGagg -5'
28726 5' -51.2 NC_006146.1 + 89017 0.66 0.992564
Target:  5'- aCGGAGCCugccguGGAUguuggGUCugaGGCCGAgGCUCCc -3'
miRNA:   3'- -GUUUCGG------UUUGa----CAG---CCGGUU-CGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.