miRNA display CGI


Results 1 - 20 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28726 5' -51.2 NC_006146.1 + 3059 0.66 0.992564
Target:  5'- ---cGCCGAgaGCgcGUUGGCCcAGGCUaCCg -3'
miRNA:   3'- guuuCGGUU--UGa-CAGCCGG-UUCGA-GG- -5'
28726 5' -51.2 NC_006146.1 + 3877 0.67 0.98384
Target:  5'- aGAAGCU--GCUGgucUCGGCgAGGC-CCa -3'
miRNA:   3'- gUUUCGGuuUGAC---AGCCGgUUCGaGG- -5'
28726 5' -51.2 NC_006146.1 + 4913 0.77 0.635488
Target:  5'- aCAGAGCCGGacccucGCUGUCggguGGCCGuGCUCUg -3'
miRNA:   3'- -GUUUCGGUU------UGACAG----CCGGUuCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 6429 0.67 0.981838
Target:  5'- cCAGGGCCA---UGUgGGCCcuGGGgUCCa -3'
miRNA:   3'- -GUUUCGGUuugACAgCCGG--UUCgAGG- -5'
28726 5' -51.2 NC_006146.1 + 7722 0.69 0.954724
Target:  5'- aGAAGCCAAgccACUGccCGGUCAaagaagAGCUCa -3'
miRNA:   3'- gUUUCGGUU---UGACa-GCCGGU------UCGAGg -5'
28726 5' -51.2 NC_006146.1 + 9297 0.68 0.968944
Target:  5'- --uAGCaCAuACUGcCGGCCGGGCagcauuugcuaUCCg -3'
miRNA:   3'- guuUCG-GUuUGACaGCCGGUUCG-----------AGG- -5'
28726 5' -51.2 NC_006146.1 + 10843 0.66 0.990223
Target:  5'- cCGAAGCCAgccAGCa---GGCCAuacGGCUCUc -3'
miRNA:   3'- -GUUUCGGU---UUGacagCCGGU---UCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 11443 0.69 0.946182
Target:  5'- --uGGCCAAGgUGgCGGCCcucaagGAGUUCCc -3'
miRNA:   3'- guuUCGGUUUgACaGCCGG------UUCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 12627 0.69 0.96086
Target:  5'- -cAGGCCAGGCcaccuuagaccCGGCCAGGCcCCa -3'
miRNA:   3'- guUUCGGUUUGaca--------GCCGGUUCGaGG- -5'
28726 5' -51.2 NC_006146.1 + 12862 0.68 0.97471
Target:  5'- uGGGGCgAGGCUGggUGGCUggGCaggCCg -3'
miRNA:   3'- gUUUCGgUUUGACa-GCCGGuuCGa--GG- -5'
28726 5' -51.2 NC_006146.1 + 12973 0.77 0.603804
Target:  5'- uGGAGUCAGAgaGUCGGCCuAGGC-CCg -3'
miRNA:   3'- gUUUCGGUUUgaCAGCCGG-UUCGaGG- -5'
28726 5' -51.2 NC_006146.1 + 13108 0.67 0.987339
Target:  5'- ---cGCCAGGCgggGUcCGGCCu--CUCCu -3'
miRNA:   3'- guuuCGGUUUGa--CA-GCCGGuucGAGG- -5'
28726 5' -51.2 NC_006146.1 + 13566 0.67 0.987339
Target:  5'- ---cGCCGGGCUGcgcaagcaGGCCGggGGCUCa -3'
miRNA:   3'- guuuCGGUUUGACag------CCGGU--UCGAGg -5'
28726 5' -51.2 NC_006146.1 + 14164 0.66 0.994436
Target:  5'- uGGAGCUGAGC-GUCuGcGCCAGGCUg- -3'
miRNA:   3'- gUUUCGGUUUGaCAG-C-CGGUUCGAgg -5'
28726 5' -51.2 NC_006146.1 + 14758 0.66 0.993554
Target:  5'- aCGAGGUCAGGCa---GGCgGGGCUCg -3'
miRNA:   3'- -GUUUCGGUUUGacagCCGgUUCGAGg -5'
28726 5' -51.2 NC_006146.1 + 15184 0.66 0.994436
Target:  5'- gAAGGCC-GACUGcgCGGCCGc-CUUCa -3'
miRNA:   3'- gUUUCGGuUUGACa-GCCGGUucGAGG- -5'
28726 5' -51.2 NC_006146.1 + 15706 0.69 0.96086
Target:  5'- -cAGGCCAGGCcaccuuagaccCGGCCAGGCcCCa -3'
miRNA:   3'- guUUCGGUUUGaca--------GCCGGUUCGaGG- -5'
28726 5' -51.2 NC_006146.1 + 15941 0.66 0.993554
Target:  5'- -uGGGCgAGGCUGggUGGCUggGCaggCCg -3'
miRNA:   3'- guUUCGgUUUGACa-GCCGGuuCGa--GG- -5'
28726 5' -51.2 NC_006146.1 + 16051 0.78 0.582779
Target:  5'- gGGAGUCAGAgaGUCGGCCuAGGC-CCg -3'
miRNA:   3'- gUUUCGGUUUgaCAGCCGG-UUCGaGG- -5'
28726 5' -51.2 NC_006146.1 + 16167 0.66 0.991457
Target:  5'- gGAAGCCGAGCguUGUCuugcugcuGGCCGcccuggugGGCUgCa -3'
miRNA:   3'- gUUUCGGUUUG--ACAG--------CCGGU--------UCGAgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.