miRNA display CGI


Results 1 - 20 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28726 5' -51.2 NC_006146.1 + 56084 0.83 0.323614
Target:  5'- -cGGGCCAAguaGgUGUCGGCCAccAGCUCCu -3'
miRNA:   3'- guUUCGGUU---UgACAGCCGGU--UCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 128274 0.72 0.881193
Target:  5'- uGAGGCCcacGGCgg-CGGCCGAGCcCCa -3'
miRNA:   3'- gUUUCGGu--UUGacaGCCGGUUCGaGG- -5'
28726 5' -51.2 NC_006146.1 + 149444 0.71 0.895259
Target:  5'- -uAGGCCGAgaGCUugCGGCUcAGCUCCg -3'
miRNA:   3'- guUUCGGUU--UGAcaGCCGGuUCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 98334 0.66 0.994436
Target:  5'- aCGGGGCCGGGCg--CGGCCcgucccGgUCCa -3'
miRNA:   3'- -GUUUCGGUUUGacaGCCGGuu----CgAGG- -5'
28726 5' -51.2 NC_006146.1 + 25285 0.78 0.582779
Target:  5'- gGGAGUCAGAgaGUCGGCCuAGGC-CCg -3'
miRNA:   3'- gUUUCGGUUUgaCAGCCGG-UUCGaGG- -5'
28726 5' -51.2 NC_006146.1 + 28363 0.78 0.582779
Target:  5'- gGGAGUCAGAgaGUCGGCCuAGGC-CCg -3'
miRNA:   3'- gUUUCGGUUUgaCAGCCGG-UUCGaGG- -5'
28726 5' -51.2 NC_006146.1 + 4913 0.77 0.635488
Target:  5'- aCAGAGCCGGacccucGCUGUCggguGGCCGuGCUCUg -3'
miRNA:   3'- -GUUUCGGUU------UGACAG----CCGGUuCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 67782 0.75 0.719172
Target:  5'- --cGGCCAggGACgUGacggCGGCCAGGCUCUg -3'
miRNA:   3'- guuUCGGU--UUG-ACa---GCCGGUUCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 46596 0.74 0.78838
Target:  5'- uCAuGGCCacgaugGggUUGUCGGCCAGGUcuUCCa -3'
miRNA:   3'- -GUuUCGG------UuuGACAGCCGGUUCG--AGG- -5'
28726 5' -51.2 NC_006146.1 + 149981 0.72 0.873052
Target:  5'- cCAGGGCCu-GCagGUCGGCCGgacucagGGcCUCCa -3'
miRNA:   3'- -GUUUCGGuuUGa-CAGCCGGU-------UC-GAGG- -5'
28726 5' -51.2 NC_006146.1 + 46698 0.73 0.833524
Target:  5'- aGGAGUCccaguAAgaGUCGGCCGcggcGGCUCCg -3'
miRNA:   3'- gUUUCGGu----UUgaCAGCCGGU----UCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 42907 0.74 0.778864
Target:  5'- cUAGGGCCucugucccGGCUGUCagcagcggcGCCAAGCUCCg -3'
miRNA:   3'- -GUUUCGGu-------UUGACAGc--------CGGUUCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 16051 0.78 0.582779
Target:  5'- gGGAGUCAGAgaGUCGGCCuAGGC-CCg -3'
miRNA:   3'- gUUUCGGUUUgaCAGCCGG-UUCGaGG- -5'
28726 5' -51.2 NC_006146.1 + 117252 0.72 0.850275
Target:  5'- cCGGGGCCAGGgggGUCGGC-AGGUUCCc -3'
miRNA:   3'- -GUUUCGGUUUga-CAGCCGgUUCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 19129 0.78 0.582779
Target:  5'- gGGAGUCAGAgaGUCGGCCuAGGC-CCg -3'
miRNA:   3'- gUUUCGGUUUgaCAGCCGG-UUCGaGG- -5'
28726 5' -51.2 NC_006146.1 + 94169 0.75 0.729379
Target:  5'- -uGGGCCuccacgAAGCUGUCGGCCucGAGCgugUCCa -3'
miRNA:   3'- guUUCGG------UUUGACAGCCGG--UUCG---AGG- -5'
28726 5' -51.2 NC_006146.1 + 158190 0.72 0.866183
Target:  5'- --uGGCCGucagGACccccuUGUCaauGGCCAGGCUCCu -3'
miRNA:   3'- guuUCGGU----UUG-----ACAG---CCGGUUCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 95505 0.71 0.894578
Target:  5'- gAAGGCCuccauauccggGAGCUGUCgggugcggcgccuGGCCAGGgUCCc -3'
miRNA:   3'- gUUUCGG-----------UUUGACAG-------------CCGGUUCgAGG- -5'
28726 5' -51.2 NC_006146.1 + 22207 0.78 0.582779
Target:  5'- gGGAGUCAGAgaGUCGGCCuAGGC-CCg -3'
miRNA:   3'- gUUUCGGUUUgaCAGCCGG-UUCGaGG- -5'
28726 5' -51.2 NC_006146.1 + 12973 0.77 0.603804
Target:  5'- uGGAGUCAGAgaGUCGGCCuAGGC-CCg -3'
miRNA:   3'- gUUUCGGUUUgaCAGCCGG-UUCGaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.