miRNA display CGI


Results 21 - 40 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28726 5' -51.2 NC_006146.1 + 113495 0.66 0.992564
Target:  5'- gUAGAGgCGuGC-GUCGGCCGGGCa-- -3'
miRNA:   3'- -GUUUCgGUuUGaCAGCCGGUUCGagg -5'
28726 5' -51.2 NC_006146.1 + 132622 0.66 0.992564
Target:  5'- aAGGGCCGGcAgUGU-GGCCc-GCUCCa -3'
miRNA:   3'- gUUUCGGUU-UgACAgCCGGuuCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 40027 0.66 0.992564
Target:  5'- gGGGGCCu-GCUGggGGCCGuAGCcgacUCCg -3'
miRNA:   3'- gUUUCGGuuUGACagCCGGU-UCG----AGG- -5'
28726 5' -51.2 NC_006146.1 + 48863 0.66 0.991457
Target:  5'- ---cGCgAAGCcGUCGGCCuccAGGCgCCa -3'
miRNA:   3'- guuuCGgUUUGaCAGCCGG---UUCGaGG- -5'
28726 5' -51.2 NC_006146.1 + 153560 0.66 0.991457
Target:  5'- --cGGUgGAGCUGccgUGGUC-AGCUCCg -3'
miRNA:   3'- guuUCGgUUUGACa--GCCGGuUCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 91209 0.66 0.991457
Target:  5'- ---cGCCugcCUGUUGGCCGGuCUCUg -3'
miRNA:   3'- guuuCGGuuuGACAGCCGGUUcGAGG- -5'
28726 5' -51.2 NC_006146.1 + 68020 0.66 0.991457
Target:  5'- -uAAGCgCAAACUGgggccCGGCCAcgaccagguggcGGCUgCCc -3'
miRNA:   3'- guUUCG-GUUUGACa----GCCGGU------------UCGA-GG- -5'
28726 5' -51.2 NC_006146.1 + 16167 0.66 0.991457
Target:  5'- gGAAGCCGAGCguUGUCuugcugcuGGCCGcccuggugGGCUgCa -3'
miRNA:   3'- gUUUCGGUUUG--ACAG--------CCGGU--------UCGAgG- -5'
28726 5' -51.2 NC_006146.1 + 86039 0.66 0.990223
Target:  5'- uGGAGCC--GCUGUCu-CCGucGGCUCCu -3'
miRNA:   3'- gUUUCGGuuUGACAGccGGU--UCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 10843 0.66 0.990223
Target:  5'- cCGAAGCCAgccAGCa---GGCCAuacGGCUCUc -3'
miRNA:   3'- -GUUUCGGU---UUGacagCCGGU---UCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 130064 0.66 0.990223
Target:  5'- aAAGGUCAAGC--UCGGCCGGGaacaCCa -3'
miRNA:   3'- gUUUCGGUUUGacAGCCGGUUCga--GG- -5'
28726 5' -51.2 NC_006146.1 + 61591 0.66 0.990223
Target:  5'- aAGAGCC-GGCUGcagCGGCCGcGGCcggggCCg -3'
miRNA:   3'- gUUUCGGuUUGACa--GCCGGU-UCGa----GG- -5'
28726 5' -51.2 NC_006146.1 + 128217 0.66 0.990223
Target:  5'- -cGGGCCAGACgcucuuUCGGCgCGgggAGCUCUu -3'
miRNA:   3'- guUUCGGUUUGac----AGCCG-GU---UCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 122564 0.66 0.990223
Target:  5'- --uGGCCAGACUGgacGCCuGGC-CCa -3'
miRNA:   3'- guuUCGGUUUGACagcCGGuUCGaGG- -5'
28726 5' -51.2 NC_006146.1 + 116647 0.66 0.990223
Target:  5'- aCAuGGCCAcaAACUGggCGGCCAucucgUCCa -3'
miRNA:   3'- -GUuUCGGU--UUGACa-GCCGGUucg--AGG- -5'
28726 5' -51.2 NC_006146.1 + 153388 0.66 0.990223
Target:  5'- --uGGCCGGAUUGUUGaggguGCCAagggAGUUCCc -3'
miRNA:   3'- guuUCGGUUUGACAGC-----CGGU----UCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 139073 0.66 0.990223
Target:  5'- gGAAGCUGGACU-UUGGCCAcgGGCcucgCCu -3'
miRNA:   3'- gUUUCGGUUUGAcAGCCGGU--UCGa---GG- -5'
28726 5' -51.2 NC_006146.1 + 147767 0.66 0.990223
Target:  5'- gCGAAGcCCAGGCUccCGGCCu--CUCCc -3'
miRNA:   3'- -GUUUC-GGUUUGAcaGCCGGuucGAGG- -5'
28726 5' -51.2 NC_006146.1 + 78561 0.66 0.988853
Target:  5'- -cGAGCCGccccauaucAGCUGccccaGGCCGGGC-CCg -3'
miRNA:   3'- guUUCGGU---------UUGACag---CCGGUUCGaGG- -5'
28726 5' -51.2 NC_006146.1 + 19021 0.66 0.988853
Target:  5'- gCGAGGCUggguGGCUGggcaGGCCGGGuCUCg -3'
miRNA:   3'- -GUUUCGGu---UUGACag--CCGGUUC-GAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.