Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28727 | 3' | -53.1 | NC_006146.1 | + | 168390 | 1.11 | 0.004395 |
Target: 5'- cGCAGCGGCGACACUAUCAUCAGCUCGu -3' miRNA: 3'- -CGUCGCCGCUGUGAUAGUAGUCGAGC- -5' |
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28727 | 3' | -53.1 | NC_006146.1 | + | 81586 | 0.77 | 0.524069 |
Target: 5'- -aAGCGGcCGACACUAcauUCAgagCAGCUCa -3' miRNA: 3'- cgUCGCC-GCUGUGAU---AGUa--GUCGAGc -5' |
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28727 | 3' | -53.1 | NC_006146.1 | + | 130297 | 0.75 | 0.636587 |
Target: 5'- aGCAGCGGCGGCAUg--CGgaGGUUCGg -3' miRNA: 3'- -CGUCGCCGCUGUGauaGUagUCGAGC- -5' |
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28727 | 3' | -53.1 | NC_006146.1 | + | 107909 | 0.72 | 0.777236 |
Target: 5'- -aAGUGGCGAaaaCAUgggagGUCGUCAGCUCc -3' miRNA: 3'- cgUCGCCGCU---GUGa----UAGUAGUCGAGc -5' |
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28727 | 3' | -53.1 | NC_006146.1 | + | 152896 | 0.7 | 0.855578 |
Target: 5'- -gGGUGGCGAUGCcGUC--CAGCUCGa -3' miRNA: 3'- cgUCGCCGCUGUGaUAGuaGUCGAGC- -5' |
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28727 | 3' | -53.1 | NC_006146.1 | + | 128282 | 0.7 | 0.855578 |
Target: 5'- aCGGCGGCGGCcgagccccagGCUucgGUCAGCUCu -3' miRNA: 3'- cGUCGCCGCUG----------UGAuagUAGUCGAGc -5' |
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28727 | 3' | -53.1 | NC_006146.1 | + | 170111 | 0.7 | 0.877512 |
Target: 5'- cGCAGggggggcCGGCGGgGCgucccGUCGUCAcGCUCGg -3' miRNA: 3'- -CGUC-------GCCGCUgUGa----UAGUAGU-CGAGC- -5' |
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28727 | 3' | -53.1 | NC_006146.1 | + | 169180 | 0.69 | 0.898218 |
Target: 5'- uGCAGggggggcCGGCGGgGCgucccGUCGUCAcGCUCGg -3' miRNA: 3'- -CGUC-------GCCGCUgUGa----UAGUAGU-CGAGC- -5' |
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28727 | 3' | -53.1 | NC_006146.1 | + | 168248 | 0.69 | 0.898218 |
Target: 5'- uGCAGggggggcCGGCGGgGCgucccGUCGUCAcGCUCGg -3' miRNA: 3'- -CGUC-------GCCGCUgUGa----UAGUAGU-CGAGC- -5' |
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28727 | 3' | -53.1 | NC_006146.1 | + | 167316 | 0.69 | 0.898218 |
Target: 5'- uGCAGggggggcCGGCGGgGCgucccGUCGUCAcGCUCGg -3' miRNA: 3'- -CGUC-------GCCGCUgUGa----UAGUAGU-CGAGC- -5' |
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28727 | 3' | -53.1 | NC_006146.1 | + | 53859 | 0.69 | 0.917376 |
Target: 5'- gGCGGUaGGCGACGCUGgcccUCAGCg-- -3' miRNA: 3'- -CGUCG-CCGCUGUGAUagu-AGUCGagc -5' |
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28727 | 3' | -53.1 | NC_006146.1 | + | 137913 | 0.68 | 0.933686 |
Target: 5'- gGUAGCGGCGGCACUGaaAUUuGUUUc -3' miRNA: 3'- -CGUCGCCGCUGUGAUagUAGuCGAGc -5' |
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28727 | 3' | -53.1 | NC_006146.1 | + | 110849 | 0.68 | 0.93815 |
Target: 5'- -aGGCGGCgcccgaucagaggGACGCUG-CGUCucgGGCUCGg -3' miRNA: 3'- cgUCGCCG-------------CUGUGAUaGUAG---UCGAGC- -5' |
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28727 | 3' | -53.1 | NC_006146.1 | + | 104447 | 0.68 | 0.947799 |
Target: 5'- aCAGgGGCGGCGCccUCGgcaggCAGCUgCGg -3' miRNA: 3'- cGUCgCCGCUGUGauAGUa----GUCGA-GC- -5' |
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28727 | 3' | -53.1 | NC_006146.1 | + | 77431 | 0.67 | 0.952023 |
Target: 5'- uGCGGCaucCGAgACUAUggCAUCAGCUCc -3' miRNA: 3'- -CGUCGcc-GCUgUGAUA--GUAGUCGAGc -5' |
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28727 | 3' | -53.1 | NC_006146.1 | + | 80099 | 0.67 | 0.959767 |
Target: 5'- -gGGUGGCGACACUGggu---GCUCa -3' miRNA: 3'- cgUCGCCGCUGUGAUaguaguCGAGc -5' |
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28727 | 3' | -53.1 | NC_006146.1 | + | 156928 | 0.67 | 0.963296 |
Target: 5'- -gGGUGGCGGCGCUGaCG--GGCUCc -3' miRNA: 3'- cgUCGCCGCUGUGAUaGUagUCGAGc -5' |
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28727 | 3' | -53.1 | NC_006146.1 | + | 126264 | 0.67 | 0.963296 |
Target: 5'- uCGGCGGgGGCAaaGUCGUCAauCUCGg -3' miRNA: 3'- cGUCGCCgCUGUgaUAGUAGUc-GAGC- -5' |
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28727 | 3' | -53.1 | NC_006146.1 | + | 75968 | 0.67 | 0.966603 |
Target: 5'- cGCAGCGGCcACGucccCUgcAUCGUCugcgugGGCUCGc -3' miRNA: 3'- -CGUCGCCGcUGU----GA--UAGUAG------UCGAGC- -5' |
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28727 | 3' | -53.1 | NC_006146.1 | + | 46292 | 0.67 | 0.966603 |
Target: 5'- cCGGUGGCGGCG--GUCG--AGCUCGa -3' miRNA: 3'- cGUCGCCGCUGUgaUAGUagUCGAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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