miRNA display CGI


Results 1 - 20 of 416 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28727 5' -66.7 NC_006146.1 + 166715 0.65 0.487402
Target:  5'- aGCCgGUUCCCGCCGaGCCcgucucggggcaggAgGCCgaGCCg -3'
miRNA:   3'- aCGGaCGGGGGCGGC-CGG--------------UgUGG--CGG- -5'
28727 5' -66.7 NC_006146.1 + 141784 0.66 0.472499
Target:  5'- cUGCCgggGUCCCUccgGCCGGCCugGuggacCCgagagGCCg -3'
miRNA:   3'- -ACGGa--CGGGGG---CGGCCGGugU-----GG-----CGG- -5'
28727 5' -66.7 NC_006146.1 + 136646 0.66 0.46384
Target:  5'- gUGCacaaCCCCCaGCCGGCC-CGgCGUCc -3'
miRNA:   3'- -ACGgac-GGGGG-CGGCCGGuGUgGCGG- -5'
28727 5' -66.7 NC_006146.1 + 42069 0.66 0.46384
Target:  5'- gGCCggGCUuaCCUGCUccuGGaCCGCGCCGUCc -3'
miRNA:   3'- aCGGa-CGG--GGGCGG---CC-GGUGUGGCGG- -5'
28727 5' -66.7 NC_006146.1 + 32816 0.66 0.46384
Target:  5'- gUGCacaaCCCCCaGCCGGCC-CGgCGUCc -3'
miRNA:   3'- -ACGgac-GGGGG-CGGCCGGuGUgGCGG- -5'
28727 5' -66.7 NC_006146.1 + 3409 0.66 0.46384
Target:  5'- cUGCCcccucuCCCCCGCCaGgCACACCcuCCu -3'
miRNA:   3'- -ACGGac----GGGGGCGGcCgGUGUGGc-GG- -5'
28727 5' -66.7 NC_006146.1 + 3252 0.66 0.46384
Target:  5'- ----cGCCCCCGggucccCCGGCaCGCGCCggGCCc -3'
miRNA:   3'- acggaCGGGGGC------GGCCG-GUGUGG--CGG- -5'
28727 5' -66.7 NC_006146.1 + 2477 0.66 0.46384
Target:  5'- cUGCCcccucuCCCCCGCCaGgCACACCcuCCu -3'
miRNA:   3'- -ACGGac----GGGGGCGGcCgGUGUGGc-GG- -5'
28727 5' -66.7 NC_006146.1 + 2320 0.66 0.46384
Target:  5'- ----cGCCCCCGggucccCCGGCaCGCGCCggGCCc -3'
miRNA:   3'- acggaCGGGGGC------GGCCG-GUGUGG--CGG- -5'
28727 5' -66.7 NC_006146.1 + 144862 0.66 0.472499
Target:  5'- cUGCCgggGUCCCUccgGCCGGCCugGuggacCCgagagGCCg -3'
miRNA:   3'- -ACGGa--CGGGGG---CGGCCGGugU-----GG-----CGG- -5'
28727 5' -66.7 NC_006146.1 + 147940 0.66 0.472499
Target:  5'- cUGCCgggGUCCCUccgGCCGGCCugGuggacCCgagagGCCg -3'
miRNA:   3'- -ACGGa--CGGGGG---CGGCCGGugU-----GG-----CGG- -5'
28727 5' -66.7 NC_006146.1 + 151018 0.66 0.472499
Target:  5'- cUGCCgggGUCCCUccgGCCGGCCugGuggacCCgagagGCCg -3'
miRNA:   3'- -ACGGa--CGGGGG---CGGCCGGugU-----GG-----CGG- -5'
28727 5' -66.7 NC_006146.1 + 152273 0.66 0.482116
Target:  5'- cUGCCUGgagugCUCUGCUGGCCACcgaagguuuggucgcCCGCUg -3'
miRNA:   3'- -ACGGACg----GGGGCGGCCGGUGu--------------GGCGG- -5'
28727 5' -66.7 NC_006146.1 + 85239 0.66 0.482116
Target:  5'- gGCCcuuucauccaccaggGUCCCCGUgGGCCA-ACCaGCCc -3'
miRNA:   3'- aCGGa--------------CGGGGGCGgCCGGUgUGG-CGG- -5'
28727 5' -66.7 NC_006146.1 + 124439 0.66 0.481238
Target:  5'- cUGCUggucgGCaCgCauCCGGCCuACGCCGCCg -3'
miRNA:   3'- -ACGGa----CG-GgGgcGGCCGG-UGUGGCGG- -5'
28727 5' -66.7 NC_006146.1 + 123244 0.66 0.472499
Target:  5'- -cCCUGgCCgCCGCgcugGGCCGgGCCGCg -3'
miRNA:   3'- acGGACgGG-GGCGg---CCGGUgUGGCGg -5'
28727 5' -66.7 NC_006146.1 + 80671 0.66 0.472499
Target:  5'- gGCCUcuCCCUCGgCuGCCuccucCACCGCCu -3'
miRNA:   3'- aCGGAc-GGGGGCgGcCGGu----GUGGCGG- -5'
28727 5' -66.7 NC_006146.1 + 75602 0.66 0.472499
Target:  5'- cGCCuacUGCCCCa-CCGuCUACAgCGCCu -3'
miRNA:   3'- aCGG---ACGGGGgcGGCcGGUGUgGCGG- -5'
28727 5' -66.7 NC_006146.1 + 157174 0.66 0.472499
Target:  5'- cUGCCgggGUCCCUccgGCCGGCCugGuggacCCgagagGCCg -3'
miRNA:   3'- -ACGGa--CGGGGG---CGGCCGGugU-----GG-----CGG- -5'
28727 5' -66.7 NC_006146.1 + 154096 0.66 0.472499
Target:  5'- cUGCCgggGUCCCUccgGCCGGCCugGuggacCCgagagGCCg -3'
miRNA:   3'- -ACGGa--CGGGGG---CGGCCGGugU-----GG-----CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.