miRNA display CGI


Results 1 - 20 of 416 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28727 5' -66.7 NC_006146.1 + 168425 1.1 0.000302
Target:  5'- cUGCCUGCCCCCGCCGGCCACACCGCCa -3'
miRNA:   3'- -ACGGACGGGGGCGGCCGGUGUGGCGG- -5'
28727 5' -66.7 NC_006146.1 + 156870 0.82 0.038723
Target:  5'- cGCCUGCCCCCGCCuGCUcccuGCccuCCGCCu -3'
miRNA:   3'- aCGGACGGGGGCGGcCGG----UGu--GGCGG- -5'
28727 5' -66.7 NC_006146.1 + 76881 0.82 0.039715
Target:  5'- gGCCgUGCCCCUGCCgGGCCGCACgugggaGCCa -3'
miRNA:   3'- aCGG-ACGGGGGCGG-CCGGUGUGg-----CGG- -5'
28727 5' -66.7 NC_006146.1 + 115224 0.81 0.047381
Target:  5'- gGCCgUGCCCgUGCUGGCCuucaACGCCGCCu -3'
miRNA:   3'- aCGG-ACGGGgGCGGCCGG----UGUGGCGG- -5'
28727 5' -66.7 NC_006146.1 + 119319 0.8 0.049825
Target:  5'- gGCCUcagucCCCCCuUCGGCCGCGCCGCCu -3'
miRNA:   3'- aCGGAc----GGGGGcGGCCGGUGUGGCGG- -5'
28727 5' -66.7 NC_006146.1 + 4221 0.8 0.049825
Target:  5'- cGUCUcCCCCCuGCCaGGCCACACCGCUc -3'
miRNA:   3'- aCGGAcGGGGG-CGG-CCGGUGUGGCGG- -5'
28727 5' -66.7 NC_006146.1 + 131053 0.79 0.060886
Target:  5'- gGCacacaGCCCCCGCCGGCCcACugugcggccgagGCCGCCg -3'
miRNA:   3'- aCGga---CGGGGGCGGCCGG-UG------------UGGCGG- -5'
28727 5' -66.7 NC_006146.1 + 114062 0.79 0.064003
Target:  5'- cUGCC-GCCCCCGCC-GCCAgagGCCGCCu -3'
miRNA:   3'- -ACGGaCGGGGGCGGcCGGUg--UGGCGG- -5'
28727 5' -66.7 NC_006146.1 + 2565 0.79 0.067273
Target:  5'- cGCUgGCCCCCGCCaGGCCccgGCcCCGCCc -3'
miRNA:   3'- aCGGaCGGGGGCGG-CCGG---UGuGGCGG- -5'
28727 5' -66.7 NC_006146.1 + 702 0.79 0.067273
Target:  5'- cGCUgGCCCCCGCCaGGCCccgGCcCCGCCc -3'
miRNA:   3'- aCGGaCGGGGGCGG-CCGG---UGuGGCGG- -5'
28727 5' -66.7 NC_006146.1 + 1633 0.79 0.067273
Target:  5'- cGCUgGCCCCCGCCaGGCCccgGCcCCGCCc -3'
miRNA:   3'- aCGGaCGGGGGCGG-CCGG---UGuGGCGG- -5'
28727 5' -66.7 NC_006146.1 + 3497 0.79 0.067273
Target:  5'- cGCUgGCCCCCGCCaGGCCccgGCcCCGCCc -3'
miRNA:   3'- aCGGaCGGGGGCGG-CCGG---UGuGGCGG- -5'
28727 5' -66.7 NC_006146.1 + 44712 0.78 0.070705
Target:  5'- gGCCgugGCCCCCGCUGGCCgGCcugaugcggugGCCGCg -3'
miRNA:   3'- aCGGa--CGGGGGCGGCCGG-UG-----------UGGCGg -5'
28727 5' -66.7 NC_006146.1 + 160162 0.78 0.076169
Target:  5'- aGCCgcaugGCCCCgGCUGGCuCugGCUGCCc -3'
miRNA:   3'- aCGGa----CGGGGgCGGCCG-GugUGGCGG- -5'
28727 5' -66.7 NC_006146.1 + 800 0.78 0.078079
Target:  5'- cGCCgGCCCCCccugcggcGCCGGCCcCucCCGCCg -3'
miRNA:   3'- aCGGaCGGGGG--------CGGCCGGuGu-GGCGG- -5'
28727 5' -66.7 NC_006146.1 + 128141 0.78 0.080034
Target:  5'- cGCCUGCaCCUGUCGGCCcUGCUGCCg -3'
miRNA:   3'- aCGGACGgGGGCGGCCGGuGUGGCGG- -5'
28727 5' -66.7 NC_006146.1 + 1731 0.78 0.080034
Target:  5'- cGCCgGCCCCCccugcaggcGCCGGCCcCucCCGCCg -3'
miRNA:   3'- aCGGaCGGGGG---------CGGCCGGuGu-GGCGG- -5'
28727 5' -66.7 NC_006146.1 + 2663 0.78 0.080034
Target:  5'- cGCCgGCCCCCccugcaggcGCCGGCCcCucCCGCCg -3'
miRNA:   3'- aCGGaCGGGGG---------CGGCCGGuGu-GGCGG- -5'
28727 5' -66.7 NC_006146.1 + 3595 0.78 0.080034
Target:  5'- cGCCgGCCCCCccugcaggcGCCGGCCcCucCCGCCg -3'
miRNA:   3'- aCGGaCGGGGG---------CGGCCGGuGu-GGCGG- -5'
28727 5' -66.7 NC_006146.1 + 153473 0.77 0.084087
Target:  5'- cGCCUGCCUCCGUcgaCGGCgCACaaugGCCGCUg -3'
miRNA:   3'- aCGGACGGGGGCG---GCCG-GUG----UGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.