miRNA display CGI


Results 1 - 20 of 416 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28727 5' -66.7 NC_006146.1 + 207 0.7 0.273003
Target:  5'- cGCCggUGCCCCCGCgaCGGUCcccgggGCGCCccugGCCu -3'
miRNA:   3'- aCGG--ACGGGGGCG--GCCGG------UGUGG----CGG- -5'
28727 5' -66.7 NC_006146.1 + 377 0.7 0.285167
Target:  5'- cGCCgcGCCCCCuCaGGCCcCGcCCGCCg -3'
miRNA:   3'- aCGGa-CGGGGGcGgCCGGuGU-GGCGG- -5'
28727 5' -66.7 NC_006146.1 + 457 0.66 0.46384
Target:  5'- ----cGCCCCCGggucccCCGGCaCGCGCCggGCCc -3'
miRNA:   3'- acggaCGGGGGC------GGCCG-GUGUGG--CGG- -5'
28727 5' -66.7 NC_006146.1 + 506 0.68 0.359687
Target:  5'- cGCCcccgagGCCCCCaggggaggcCCGGCCuccacACACgGCCu -3'
miRNA:   3'- aCGGa-----CGGGGGc--------GGCCGG-----UGUGgCGG- -5'
28727 5' -66.7 NC_006146.1 + 614 0.66 0.46384
Target:  5'- cUGCCcccucuCCCCCGCCaGgCACACCcuCCu -3'
miRNA:   3'- -ACGGac----GGGGGCGGcCgGUGUGGc-GG- -5'
28727 5' -66.7 NC_006146.1 + 702 0.79 0.067273
Target:  5'- cGCUgGCCCCCGCCaGGCCccgGCcCCGCCc -3'
miRNA:   3'- aCGGaCGGGGGCGG-CCGG---UGuGGCGG- -5'
28727 5' -66.7 NC_006146.1 + 738 0.74 0.146947
Target:  5'- aGCCcccucaGCCCCCgGCCGGCgC-CGCCGCg -3'
miRNA:   3'- aCGGa-----CGGGGG-CGGCCG-GuGUGGCGg -5'
28727 5' -66.7 NC_006146.1 + 800 0.78 0.078079
Target:  5'- cGCCgGCCCCCccugcggcGCCGGCCcCucCCGCCg -3'
miRNA:   3'- aCGGaCGGGGG--------CGGCCGGuGu-GGCGG- -5'
28727 5' -66.7 NC_006146.1 + 912 0.68 0.3671
Target:  5'- cGCC-GCCCCCcgggaccCCgGGCgCGCGCCgGCCu -3'
miRNA:   3'- aCGGaCGGGGGc------GG-CCG-GUGUGG-CGG- -5'
28727 5' -66.7 NC_006146.1 + 1138 0.75 0.130389
Target:  5'- cGCCggUGCCCCCGCgaGGguccCCGgGCCGCCc -3'
miRNA:   3'- aCGG--ACGGGGGCGg-CC----GGUgUGGCGG- -5'
28727 5' -66.7 NC_006146.1 + 1388 0.66 0.46384
Target:  5'- ----cGCCCCCGggucccCCGGCaCGCGCCggGCCc -3'
miRNA:   3'- acggaCGGGGGC------GGCCG-GUGUGG--CGG- -5'
28727 5' -66.7 NC_006146.1 + 1437 0.68 0.359687
Target:  5'- cGCCcccgagGCCCCCaggggaggcCCGGCCuccacACACgGCCu -3'
miRNA:   3'- aCGGa-----CGGGGGc--------GGCCGG-----UGUGgCGG- -5'
28727 5' -66.7 NC_006146.1 + 1545 0.66 0.46384
Target:  5'- cUGCCcccucuCCCCCGCCaGgCACACCcuCCu -3'
miRNA:   3'- -ACGGac----GGGGGCGGcCgGUGUGGc-GG- -5'
28727 5' -66.7 NC_006146.1 + 1633 0.79 0.067273
Target:  5'- cGCUgGCCCCCGCCaGGCCccgGCcCCGCCc -3'
miRNA:   3'- aCGGaCGGGGGCGG-CCGG---UGuGGCGG- -5'
28727 5' -66.7 NC_006146.1 + 1669 0.74 0.146947
Target:  5'- aGCCcccucaGCCCCCgGCCGGCgC-CGCCGCg -3'
miRNA:   3'- aCGGa-----CGGGGG-CGGCCG-GuGUGGCGg -5'
28727 5' -66.7 NC_006146.1 + 1731 0.78 0.080034
Target:  5'- cGCCgGCCCCCccugcaggcGCCGGCCcCucCCGCCg -3'
miRNA:   3'- aCGGaCGGGGG---------CGGCCGGuGu-GGCGG- -5'
28727 5' -66.7 NC_006146.1 + 1844 0.68 0.3671
Target:  5'- cGCC-GCCCCCcgggaccCCgGGCgCGCGCCgGCCu -3'
miRNA:   3'- aCGGaCGGGGGc------GG-CCG-GUGUGG-CGG- -5'
28727 5' -66.7 NC_006146.1 + 2070 0.75 0.130389
Target:  5'- cGCCggUGCCCCCGCgaGGguccCCGgGCCGCCc -3'
miRNA:   3'- aCGG--ACGGGGGCGg-CC----GGUgUGGCGG- -5'
28727 5' -66.7 NC_006146.1 + 2320 0.66 0.46384
Target:  5'- ----cGCCCCCGggucccCCGGCaCGCGCCggGCCc -3'
miRNA:   3'- acggaCGGGGGC------GGCCG-GUGUGG--CGG- -5'
28727 5' -66.7 NC_006146.1 + 2369 0.68 0.359687
Target:  5'- cGCCcccgagGCCCCCaggggaggcCCGGCCuccacACACgGCCu -3'
miRNA:   3'- aCGGa-----CGGGGGc--------GGCCGG-----UGUGgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.