miRNA display CGI


Results 21 - 40 of 416 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28727 5' -66.7 NC_006146.1 + 154096 0.66 0.472499
Target:  5'- cUGCCgggGUCCCUccgGCCGGCCugGuggacCCgagagGCCg -3'
miRNA:   3'- -ACGGa--CGGGGG---CGGCCGGugU-----GG-----CGG- -5'
28727 5' -66.7 NC_006146.1 + 151018 0.66 0.472499
Target:  5'- cUGCCgggGUCCCUccgGCCGGCCugGuggacCCgagagGCCg -3'
miRNA:   3'- -ACGGa--CGGGGG---CGGCCGGugU-----GG-----CGG- -5'
28727 5' -66.7 NC_006146.1 + 147940 0.66 0.472499
Target:  5'- cUGCCgggGUCCCUccgGCCGGCCugGuggacCCgagagGCCg -3'
miRNA:   3'- -ACGGa--CGGGGG---CGGCCGGugU-----GG-----CGG- -5'
28727 5' -66.7 NC_006146.1 + 144862 0.66 0.472499
Target:  5'- cUGCCgggGUCCCUccgGCCGGCCugGuggacCCgagagGCCg -3'
miRNA:   3'- -ACGGa--CGGGGG---CGGCCGGugU-----GG-----CGG- -5'
28727 5' -66.7 NC_006146.1 + 141784 0.66 0.472499
Target:  5'- cUGCCgggGUCCCUccgGCCGGCCugGuggacCCgagagGCCg -3'
miRNA:   3'- -ACGGa--CGGGGG---CGGCCGGugU-----GG-----CGG- -5'
28727 5' -66.7 NC_006146.1 + 167349 0.66 0.472499
Target:  5'- cGCUcgGCUgCaCGCgCGGCgGCGCCgGCCg -3'
miRNA:   3'- aCGGa-CGGgG-GCG-GCCGgUGUGG-CGG- -5'
28727 5' -66.7 NC_006146.1 + 65268 0.66 0.471629
Target:  5'- cGCUUGCCauaacuuucaUCCGUgcggcuguggaccUGGCUGCGCUGCCu -3'
miRNA:   3'- aCGGACGG----------GGGCG-------------GCCGGUGUGGCGG- -5'
28727 5' -66.7 NC_006146.1 + 65035 0.66 0.469892
Target:  5'- cGCUaucuUGCCUCC-CCGGCUuccucgagcucuugGCAgCGCCu -3'
miRNA:   3'- aCGG----ACGGGGGcGGCCGG--------------UGUgGCGG- -5'
28727 5' -66.7 NC_006146.1 + 136646 0.66 0.46384
Target:  5'- gUGCacaaCCCCCaGCCGGCC-CGgCGUCc -3'
miRNA:   3'- -ACGgac-GGGGG-CGGCCGGuGUgGCGG- -5'
28727 5' -66.7 NC_006146.1 + 60310 0.66 0.46384
Target:  5'- uUGCCUGCCUgaCgGUCGaGaCC-CACCGCa -3'
miRNA:   3'- -ACGGACGGG--GgCGGC-C-GGuGUGGCGg -5'
28727 5' -66.7 NC_006146.1 + 42069 0.66 0.46384
Target:  5'- gGCCggGCUuaCCUGCUccuGGaCCGCGCCGUCc -3'
miRNA:   3'- aCGGa-CGG--GGGCGG---CC-GGUGUGGCGG- -5'
28727 5' -66.7 NC_006146.1 + 2320 0.66 0.46384
Target:  5'- ----cGCCCCCGggucccCCGGCaCGCGCCggGCCc -3'
miRNA:   3'- acggaCGGGGGC------GGCCG-GUGUGG--CGG- -5'
28727 5' -66.7 NC_006146.1 + 1545 0.66 0.46384
Target:  5'- cUGCCcccucuCCCCCGCCaGgCACACCcuCCu -3'
miRNA:   3'- -ACGGac----GGGGGCGGcCgGUGUGGc-GG- -5'
28727 5' -66.7 NC_006146.1 + 53654 0.66 0.46384
Target:  5'- cUGCC-GaCCCCC-CUGGCCcCgGCCGCUu -3'
miRNA:   3'- -ACGGaC-GGGGGcGGCCGGuG-UGGCGG- -5'
28727 5' -66.7 NC_006146.1 + 4895 0.66 0.46384
Target:  5'- gGCCUGCg-CCGCCuGGUgACAgaGCCg -3'
miRNA:   3'- aCGGACGggGGCGG-CCGgUGUggCGG- -5'
28727 5' -66.7 NC_006146.1 + 1388 0.66 0.46384
Target:  5'- ----cGCCCCCGggucccCCGGCaCGCGCCggGCCc -3'
miRNA:   3'- acggaCGGGGGC------GGCCG-GUGUGG--CGG- -5'
28727 5' -66.7 NC_006146.1 + 614 0.66 0.46384
Target:  5'- cUGCCcccucuCCCCCGCCaGgCACACCcuCCu -3'
miRNA:   3'- -ACGGac----GGGGGCGGcCgGUGUGGc-GG- -5'
28727 5' -66.7 NC_006146.1 + 457 0.66 0.46384
Target:  5'- ----cGCCCCCGggucccCCGGCaCGCGCCggGCCc -3'
miRNA:   3'- acggaCGGGGGC------GGCCG-GUGUGG--CGG- -5'
28727 5' -66.7 NC_006146.1 + 127405 0.66 0.46384
Target:  5'- gGCUgGgCCCCGCCGccggagccgguGUCAacgGCCGCCg -3'
miRNA:   3'- aCGGaCgGGGGCGGC-----------CGGUg--UGGCGG- -5'
28727 5' -66.7 NC_006146.1 + 70734 0.66 0.46384
Target:  5'- gGCUuauUGCCCCC-CUcGCgGaCGCCGCCg -3'
miRNA:   3'- aCGG---ACGGGGGcGGcCGgU-GUGGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.