Results 1 - 20 of 215 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28728 | 3' | -61.2 | NC_006146.1 | + | 42718 | 0.66 | 0.758601 |
Target: 5'- cCCGCucggGCUGGCAgCCgCGgaUCCgGGCGg -3' miRNA: 3'- -GGUGu---UGGCCGUgGG-GCg-AGGaCCGC- -5' |
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28728 | 3' | -61.2 | NC_006146.1 | + | 25504 | 0.66 | 0.740247 |
Target: 5'- gCUACAACCccUACCCCaagaGCaCCUGGCGc -3' miRNA: 3'- -GGUGUUGGccGUGGGG----CGaGGACCGC- -5' |
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28728 | 3' | -61.2 | NC_006146.1 | + | 125765 | 0.66 | 0.730938 |
Target: 5'- aCC-CAGCCcGCaaaGCCCaagGCUCCcGGCGg -3' miRNA: 3'- -GGuGUUGGcCG---UGGGg--CGAGGaCCGC- -5' |
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28728 | 3' | -61.2 | NC_006146.1 | + | 123267 | 0.66 | 0.730938 |
Target: 5'- gCCGCGGCCagagacGGCucgugGCCCUaucgGCgaucCCUGGCGg -3' miRNA: 3'- -GGUGUUGG------CCG-----UGGGG----CGa---GGACCGC- -5' |
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28728 | 3' | -61.2 | NC_006146.1 | + | 53334 | 0.66 | 0.730938 |
Target: 5'- uCCACAcGCCGGCccauACCCUGaacagCCUGaauGCGg -3' miRNA: 3'- -GGUGU-UGGCCG----UGGGGCga---GGAC---CGC- -5' |
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28728 | 3' | -61.2 | NC_006146.1 | + | 23766 | 0.66 | 0.730938 |
Target: 5'- gCCGCGGCCgagaauGGCGgCCUGCgcgUCUGGgGc -3' miRNA: 3'- -GGUGUUGG------CCGUgGGGCGa--GGACCgC- -5' |
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28728 | 3' | -61.2 | NC_006146.1 | + | 23520 | 0.66 | 0.721551 |
Target: 5'- cCCGCcgugAACuCGGgACuCCCGUgUCUGGCGg -3' miRNA: 3'- -GGUG----UUG-GCCgUG-GGGCGaGGACCGC- -5' |
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28728 | 3' | -61.2 | NC_006146.1 | + | 40989 | 0.66 | 0.721551 |
Target: 5'- gCCGC-GCCGGCGCCCCag----GGCGc -3' miRNA: 3'- -GGUGuUGGCCGUGGGGcgaggaCCGC- -5' |
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28728 | 3' | -61.2 | NC_006146.1 | + | 165671 | 0.66 | 0.712095 |
Target: 5'- cCCACAgccccgagGCCGGCaaggaccugcACCCCuaGCUCCcccaGGCc -3' miRNA: 3'- -GGUGU--------UGGCCG----------UGGGG--CGAGGa---CCGc -5' |
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28728 | 3' | -61.2 | NC_006146.1 | + | 129638 | 0.66 | 0.740247 |
Target: 5'- uCCGCGGgCGcGUGCUCCGC-CCgggaaUGGCGa -3' miRNA: 3'- -GGUGUUgGC-CGUGGGGCGaGG-----ACCGC- -5' |
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28728 | 3' | -61.2 | NC_006146.1 | + | 39380 | 0.66 | 0.749471 |
Target: 5'- cCCAC--UCGGCGCCCgGUUacCCUGGg- -3' miRNA: 3'- -GGUGuuGGCCGUGGGgCGA--GGACCgc -5' |
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28728 | 3' | -61.2 | NC_006146.1 | + | 106249 | 0.66 | 0.749471 |
Target: 5'- aCCACGGCgaCGuGCcccugGCCCCGgcggaagacaucCUCCUGGCc -3' miRNA: 3'- -GGUGUUG--GC-CG-----UGGGGC------------GAGGACCGc -5' |
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28728 | 3' | -61.2 | NC_006146.1 | + | 42065 | 0.66 | 0.758601 |
Target: 5'- gCCugGcCgGGCuuaCCUGCUCCUGGa- -3' miRNA: 3'- -GGugUuGgCCGug-GGGCGAGGACCgc -5' |
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28728 | 3' | -61.2 | NC_006146.1 | + | 32923 | 0.66 | 0.758601 |
Target: 5'- cCCACcccGCCGGC-CCCCGggaggCCcGGCc -3' miRNA: 3'- -GGUGu--UGGCCGuGGGGCga---GGaCCGc -5' |
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28728 | 3' | -61.2 | NC_006146.1 | + | 18369 | 0.66 | 0.758601 |
Target: 5'- -gGCAugCu-CACCCUGgUCCUGGUGg -3' miRNA: 3'- ggUGUugGccGUGGGGCgAGGACCGC- -5' |
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28728 | 3' | -61.2 | NC_006146.1 | + | 4898 | 0.66 | 0.753135 |
Target: 5'- cCCACAACCGcauGCAuCCCUacucuuuggaucccuGCUCCuccucgUGGCa -3' miRNA: 3'- -GGUGUUGGC---CGU-GGGG---------------CGAGG------ACCGc -5' |
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28728 | 3' | -61.2 | NC_006146.1 | + | 124730 | 0.66 | 0.749471 |
Target: 5'- gCCGCucuCUGGCcccACCCgaGUUCCUGGgGc -3' miRNA: 3'- -GGUGuu-GGCCG---UGGGg-CGAGGACCgC- -5' |
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28728 | 3' | -61.2 | NC_006146.1 | + | 123907 | 0.66 | 0.749471 |
Target: 5'- gCCGCuGCCGGU-CCgacgggCGCaauUCCUGGCGg -3' miRNA: 3'- -GGUGuUGGCCGuGGg-----GCG---AGGACCGC- -5' |
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28728 | 3' | -61.2 | NC_006146.1 | + | 108211 | 0.66 | 0.749471 |
Target: 5'- gCuuGACCGcacGCACCgCGCgCUUGGCGg -3' miRNA: 3'- gGugUUGGC---CGUGGgGCGaGGACCGC- -5' |
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28728 | 3' | -61.2 | NC_006146.1 | + | 19577 | 0.66 | 0.749471 |
Target: 5'- aCCucuCGGuCCGGCGCgaggaCaGCUCCUGGCc -3' miRNA: 3'- -GGu--GUU-GGCCGUGg----GgCGAGGACCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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