miRNA display CGI


Results 1 - 20 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28728 3' -61.2 NC_006146.1 + 168057 1.09 0.001211
Target:  5'- gCCACAACCGGCACCCCGCUCCUGGCGu -3'
miRNA:   3'- -GGUGUUGGCCGUGGGGCGAGGACCGC- -5'
28728 3' -61.2 NC_006146.1 + 85517 0.77 0.195105
Target:  5'- uCCAC-GCCGGU-CCCgGCUUCUGGCGu -3'
miRNA:   3'- -GGUGuUGGCCGuGGGgCGAGGACCGC- -5'
28728 3' -61.2 NC_006146.1 + 125210 0.76 0.224618
Target:  5'- aCUGCGACgGGCGCUcagagcccuuCCGCUcCCUGGCGg -3'
miRNA:   3'- -GGUGUUGgCCGUGG----------GGCGA-GGACCGC- -5'
28728 3' -61.2 NC_006146.1 + 71500 0.75 0.252033
Target:  5'- -gGCGuuGCCGGCACCCCccuggccgacucGCUCCUGGg- -3'
miRNA:   3'- ggUGU--UGGCCGUGGGG------------CGAGGACCgc -5'
28728 3' -61.2 NC_006146.1 + 33253 0.75 0.252033
Target:  5'- uCCGCcgGGCCGcUGCCCCGCUCCgGGUGg -3'
miRNA:   3'- -GGUG--UUGGCcGUGGGGCGAGGaCCGC- -5'
28728 3' -61.2 NC_006146.1 + 33375 0.75 0.252033
Target:  5'- uCCGCcgGGCCGcUGCCCCGCUCCgGGUGg -3'
miRNA:   3'- -GGUG--UUGGCcGUGGGGCGAGGaCCGC- -5'
28728 3' -61.2 NC_006146.1 + 22943 0.74 0.301542
Target:  5'- aCCAUccagggaugaaGGCCGGCugCUauCUCCUGGCGg -3'
miRNA:   3'- -GGUG-----------UUGGCCGugGGgcGAGGACCGC- -5'
28728 3' -61.2 NC_006146.1 + 23437 0.74 0.321257
Target:  5'- aCCACAAgcuCCGGCugCCCGuCUcggccuacgaggcCCUGGCc -3'
miRNA:   3'- -GGUGUU---GGCCGugGGGC-GA-------------GGACCGc -5'
28728 3' -61.2 NC_006146.1 + 136132 0.73 0.328983
Target:  5'- cCCugGGuCCGcUGCCCCGCUCC-GGCGg -3'
miRNA:   3'- -GGugUU-GGCcGUGGGGCGAGGaCCGC- -5'
28728 3' -61.2 NC_006146.1 + 135389 0.73 0.328983
Target:  5'- cCCugGGuCCGcUGCCCCGCUCC-GGCGg -3'
miRNA:   3'- -GGugUU-GGCcGUGGGGCGAGGaCCGC- -5'
28728 3' -61.2 NC_006146.1 + 135296 0.73 0.328983
Target:  5'- cCCugGGuCCGcUGCCCCGCUCC-GGCGg -3'
miRNA:   3'- -GGugUU-GGCcGUGGGGCGAGGaCCGC- -5'
28728 3' -61.2 NC_006146.1 + 135946 0.73 0.328983
Target:  5'- cCCugGGuCCGcUGCCCCGCUCC-GGCGg -3'
miRNA:   3'- -GGugUU-GGCcGUGGGGCGAGGaCCGC- -5'
28728 3' -61.2 NC_006146.1 + 135482 0.73 0.328983
Target:  5'- cCCugGGuCCGcUGCCCCGCUCC-GGCGg -3'
miRNA:   3'- -GGugUU-GGCcGUGGGGCGAGGaCCGC- -5'
28728 3' -61.2 NC_006146.1 + 135203 0.73 0.328983
Target:  5'- cCCugGGuCCGcUGCCCCGCUCC-GGCGg -3'
miRNA:   3'- -GGugUU-GGCcGUGGGGCGAGGaCCGC- -5'
28728 3' -61.2 NC_006146.1 + 135575 0.73 0.328983
Target:  5'- cCCugGGuCCGcUGCCCCGCUCC-GGCGg -3'
miRNA:   3'- -GGugUU-GGCcGUGGGGCGAGGaCCGC- -5'
28728 3' -61.2 NC_006146.1 + 135668 0.73 0.328983
Target:  5'- cCCugGGuCCGcUGCCCCGCUCC-GGCGg -3'
miRNA:   3'- -GGugUU-GGCcGUGGGGCGAGGaCCGC- -5'
28728 3' -61.2 NC_006146.1 + 135853 0.73 0.328983
Target:  5'- cCCugGGuCCGcUGCCCCGCUCC-GGCGg -3'
miRNA:   3'- -GGugUU-GGCcGUGGGGCGAGGaCCGC- -5'
28728 3' -61.2 NC_006146.1 + 136039 0.73 0.328983
Target:  5'- cCCugGGuCCGcUGCCCCGCUCC-GGCGg -3'
miRNA:   3'- -GGugUU-GGCcGUGGGGCGAGGaCCGC- -5'
28728 3' -61.2 NC_006146.1 + 135760 0.73 0.328983
Target:  5'- cCCugGGuCCGcUGCCCCGCUCC-GGCGg -3'
miRNA:   3'- -GGugUU-GGCcGUGGGGCGAGGaCCGC- -5'
28728 3' -61.2 NC_006146.1 + 71434 0.73 0.328983
Target:  5'- gCGCGGCCGGCAUUuuGgCaCCUGGCGc -3'
miRNA:   3'- gGUGUUGGCCGUGGggC-GaGGACCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.