miRNA display CGI


Results 1 - 20 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28728 3' -61.2 NC_006146.1 + 201 0.67 0.683388
Target:  5'- uCUACGcGCCGGUGCCCCcGCgacggUCCccggGGCGc -3'
miRNA:   3'- -GGUGU-UGGCCGUGGGG-CG-----AGGa---CCGC- -5'
28728 3' -61.2 NC_006146.1 + 685 0.72 0.389238
Target:  5'- cCCGCc-CCGGgACCCCGCg-CUGGCc -3'
miRNA:   3'- -GGUGuuGGCCgUGGGGCGagGACCGc -5'
28728 3' -61.2 NC_006146.1 + 749 0.67 0.673733
Target:  5'- cCCcCGGCCGGCGCCgCCGCgcgugcagCC-GaGCGu -3'
miRNA:   3'- -GGuGUUGGCCGUGG-GGCGa-------GGaC-CGC- -5'
28728 3' -61.2 NC_006146.1 + 933 0.66 0.712095
Target:  5'- gCGCGcGCCGGCcUCCCGUcccgaaggcCCUGGCa -3'
miRNA:   3'- gGUGU-UGGCCGuGGGGCGa--------GGACCGc -5'
28728 3' -61.2 NC_006146.1 + 1132 0.68 0.586306
Target:  5'- uCCACGcGCCGGUGCCCCcGCgagggUCCccgGGCc -3'
miRNA:   3'- -GGUGU-UGGCCGUGGGG-CG-----AGGa--CCGc -5'
28728 3' -61.2 NC_006146.1 + 1616 0.72 0.389238
Target:  5'- cCCGCc-CCGGgACCCCGCg-CUGGCc -3'
miRNA:   3'- -GGUGuuGGCCgUGGGGCGagGACCGc -5'
28728 3' -61.2 NC_006146.1 + 1680 0.67 0.673733
Target:  5'- cCCcCGGCCGGCGCCgCCGCgcgugcagCC-GaGCGu -3'
miRNA:   3'- -GGuGUUGGCCGUGG-GGCGa-------GGaC-CGC- -5'
28728 3' -61.2 NC_006146.1 + 1865 0.66 0.712095
Target:  5'- gCGCGcGCCGGCcUCCCGUcccgaaggcCCUGGCa -3'
miRNA:   3'- gGUGU-UGGCCGuGGGGCGa--------GGACCGc -5'
28728 3' -61.2 NC_006146.1 + 2064 0.68 0.586306
Target:  5'- uCCACGcGCCGGUGCCCCcGCgagggUCCccgGGCc -3'
miRNA:   3'- -GGUGU-UGGCCGUGGGG-CG-----AGGa--CCGc -5'
28728 3' -61.2 NC_006146.1 + 2548 0.72 0.389238
Target:  5'- cCCGCc-CCGGgACCCCGCg-CUGGCc -3'
miRNA:   3'- -GGUGuuGGCCgUGGGGCGagGACCGc -5'
28728 3' -61.2 NC_006146.1 + 2612 0.67 0.673733
Target:  5'- cCCcCGGCCGGCGCCgCCGCgcgugcagCC-GaGCGu -3'
miRNA:   3'- -GGuGUUGGCCGUGG-GGCGa-------GGaC-CGC- -5'
28728 3' -61.2 NC_006146.1 + 2797 0.66 0.712095
Target:  5'- gCGCGcGCCGGCcUCCCGUcccgaaggcCCUGGCa -3'
miRNA:   3'- gGUGU-UGGCCGuGGGGCGa--------GGACCGc -5'
28728 3' -61.2 NC_006146.1 + 2996 0.68 0.586306
Target:  5'- uCCACGcGCCGGUGCCCCcGCgagggUCCccgGGCc -3'
miRNA:   3'- -GGUGU-UGGCCGUGGGG-CG-----AGGa--CCGc -5'
28728 3' -61.2 NC_006146.1 + 3480 0.72 0.389238
Target:  5'- cCCGCc-CCGGgACCCCGCg-CUGGCc -3'
miRNA:   3'- -GGUGuuGGCCgUGGGGCGagGACCGc -5'
28728 3' -61.2 NC_006146.1 + 3544 0.67 0.673733
Target:  5'- cCCcCGGCCGGCGCCgCCGCgcgugcagCC-GaGCGu -3'
miRNA:   3'- -GGuGUUGGCCGUGG-GGCGa-------GGaC-CGC- -5'
28728 3' -61.2 NC_006146.1 + 3729 0.66 0.712095
Target:  5'- gCGCGcGCCGGCcUCCCGUcccgaaggcCCUGGCa -3'
miRNA:   3'- gGUGU-UGGCCGuGGGGCGa--------GGACCGc -5'
28728 3' -61.2 NC_006146.1 + 4898 0.66 0.753135
Target:  5'- cCCACAACCGcauGCAuCCCUacucuuuggaucccuGCUCCuccucgUGGCa -3'
miRNA:   3'- -GGUGUUGGC---CGU-GGGG---------------CGAGG------ACCGc -5'
28728 3' -61.2 NC_006146.1 + 9462 0.66 0.708295
Target:  5'- cCCACGcGCCuuGGguUCCCGCggggccacacccgCCUGGCa -3'
miRNA:   3'- -GGUGU-UGG--CCguGGGGCGa------------GGACCGc -5'
28728 3' -61.2 NC_006146.1 + 10910 0.7 0.510416
Target:  5'- uCCACAGgaGGCcagACCCCaacugcggGCUCCUGcGCGc -3'
miRNA:   3'- -GGUGUUggCCG---UGGGG--------CGAGGAC-CGC- -5'
28728 3' -61.2 NC_006146.1 + 11576 0.66 0.702577
Target:  5'- gCACGagacGCCGGCcaGCCUcaacuaCGaCUCCUGGCc -3'
miRNA:   3'- gGUGU----UGGCCG--UGGG------GC-GAGGACCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.