miRNA display CGI


Results 1 - 20 of 58 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28728 5' -58.8 NC_006146.1 + 168095 1.08 0.001722
Target:  5'- cACCGCCUUGGUCUGGAAGGCCUGCUGg -3'
miRNA:   3'- -UGGCGGAACCAGACCUUCCGGACGAC- -5'
28728 5' -58.8 NC_006146.1 + 120832 0.74 0.332033
Target:  5'- uGCCGCacaagcgcuucCUGGAGGGCCUGCUGg -3'
miRNA:   3'- -UGGCGgaacca-----GACCUUCCGGACGAC- -5'
28728 5' -58.8 NC_006146.1 + 39662 0.74 0.332033
Target:  5'- gACUGCCUUGGcCuUGGAggcggcgggcuccuGGGCCUGCa- -3'
miRNA:   3'- -UGGCGGAACCaG-ACCU--------------UCCGGACGac -5'
28728 5' -58.8 NC_006146.1 + 51168 0.72 0.432
Target:  5'- cGCCGCUgugGGUgUGGAaggGGGUCUGCg- -3'
miRNA:   3'- -UGGCGGaa-CCAgACCU---UCCGGACGac -5'
28728 5' -58.8 NC_006146.1 + 154657 0.71 0.477364
Target:  5'- uGCCGCCggcugcaccgUGGUggcGGggGGCgCUGCUGc -3'
miRNA:   3'- -UGGCGGa---------ACCAga-CCuuCCG-GACGAC- -5'
28728 5' -58.8 NC_006146.1 + 41577 0.71 0.515286
Target:  5'- gGCCGCCUacUGG-CUGGccgaggcggaGAGGCCcgggggGCUGg -3'
miRNA:   3'- -UGGCGGA--ACCaGACC----------UUCCGGa-----CGAC- -5'
28728 5' -58.8 NC_006146.1 + 134614 0.69 0.611399
Target:  5'- aGCCGCCUUG--CUGGugaauccaagcaucAAGGCCUucGCUGg -3'
miRNA:   3'- -UGGCGGAACcaGACC--------------UUCCGGA--CGAC- -5'
28728 5' -58.8 NC_006146.1 + 72323 0.69 0.62452
Target:  5'- gGCC-CCUuucUGGUCUGGcauGAGGCCUucGCUu -3'
miRNA:   3'- -UGGcGGA---ACCAGACC---UUCCGGA--CGAc -5'
28728 5' -58.8 NC_006146.1 + 125613 0.69 0.644719
Target:  5'- --gGUCUUGGUCUGGcGGGCCUcagggGCa- -3'
miRNA:   3'- uggCGGAACCAGACCuUCCGGA-----CGac -5'
28728 5' -58.8 NC_006146.1 + 46598 0.68 0.654808
Target:  5'- cACCauugGCC-UGGccCUGGAAGaGCCUGUUGa -3'
miRNA:   3'- -UGG----CGGaACCa-GACCUUC-CGGACGAC- -5'
28728 5' -58.8 NC_006146.1 + 99307 0.68 0.654808
Target:  5'- cCCGCC-UGGUCaGGGccAGaCCUGCUGc -3'
miRNA:   3'- uGGCGGaACCAGaCCU--UCcGGACGAC- -5'
28728 5' -58.8 NC_006146.1 + 39074 0.68 0.66488
Target:  5'- cGCCgGCCUccGGUCUGGGgaAGGCCaggGCc- -3'
miRNA:   3'- -UGG-CGGAa-CCAGACCU--UCCGGa--CGac -5'
28728 5' -58.8 NC_006146.1 + 154669 0.68 0.673922
Target:  5'- gGCCggGUCUUGGgcCUGGGAGuccgggguguugaGCCUGCUGc -3'
miRNA:   3'- -UGG--CGGAACCa-GACCUUC-------------CGGACGAC- -5'
28728 5' -58.8 NC_006146.1 + 157058 0.68 0.674925
Target:  5'- gGCCGCCggGGUCccuccGGccGGCCUGaUGg -3'
miRNA:   3'- -UGGCGGaaCCAGa----CCuuCCGGACgAC- -5'
28728 5' -58.8 NC_006146.1 + 150902 0.68 0.674925
Target:  5'- gGCCGCCggGGUCccuccGGccGGCCUGaUGg -3'
miRNA:   3'- -UGGCGGaaCCAGa----CCuuCCGGACgAC- -5'
28728 5' -58.8 NC_006146.1 + 141669 0.68 0.674925
Target:  5'- gGCCGCCggGGUCccuccGGccGGCCUGaUGg -3'
miRNA:   3'- -UGGCGGaaCCAGa----CCuuCCGGACgAC- -5'
28728 5' -58.8 NC_006146.1 + 153980 0.68 0.674925
Target:  5'- gGCCGCCggGGUCccuccGGccGGCCUGaUGg -3'
miRNA:   3'- -UGGCGGaaCCAGa----CCuuCCGGACgAC- -5'
28728 5' -58.8 NC_006146.1 + 147824 0.68 0.674925
Target:  5'- gGCCGCCggGGUCccuccGGccGGCCUGaUGg -3'
miRNA:   3'- -UGGCGGaaCCAGa----CCuuCCGGACgAC- -5'
28728 5' -58.8 NC_006146.1 + 127213 0.68 0.674925
Target:  5'- -aCGCCguagUGGccuUCUcGGAGGGCCUGgaGc -3'
miRNA:   3'- ugGCGGa---ACC---AGA-CCUUCCGGACgaC- -5'
28728 5' -58.8 NC_006146.1 + 144746 0.68 0.674925
Target:  5'- gGCCGCCggGGUCccuccGGccGGCCUGaUGg -3'
miRNA:   3'- -UGGCGGaaCCAGa----CCuuCCGGACgAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.