miRNA display CGI


Results 1 - 20 of 317 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28729 3' -62.4 NC_006146.1 + 167172 1.08 0.001006
Target:  5'- cUGAAGGGCCACGCGGCCCCCAGAGACc -3'
miRNA:   3'- -ACUUCCCGGUGCGCCGGGGGUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 128061 0.79 0.112252
Target:  5'- ---uGGGCCugGCGGCCCUC-GAGGCc -3'
miRNA:   3'- acuuCCCGGugCGCCGGGGGuCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 18948 0.78 0.127202
Target:  5'- gGAAGGGCauguggugCGCcaGCGGCCCCUAGAGAg -3'
miRNA:   3'- aCUUCCCG--------GUG--CGCCGGGGGUCUCUg -5'
28729 3' -62.4 NC_006146.1 + 40490 0.77 0.151235
Target:  5'- aGAGGGGCCGCGaaaGGCagcggacucugCCUCGGAGGCu -3'
miRNA:   3'- aCUUCCCGGUGCg--CCG-----------GGGGUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 1830 0.76 0.170856
Target:  5'- gGggGaaGGCCGCGCGccGCCCCCcGGGACc -3'
miRNA:   3'- aCuuC--CCGGUGCGC--CGGGGGuCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 3694 0.76 0.170856
Target:  5'- gGggGaaGGCCGCGCGccGCCCCCcGGGACc -3'
miRNA:   3'- aCuuC--CCGGUGCGC--CGGGGGuCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 72571 0.76 0.170856
Target:  5'- gGAcGGGCCGCGCccGGCCCCguGccAGACg -3'
miRNA:   3'- aCUuCCCGGUGCG--CCGGGGguC--UCUG- -5'
28729 3' -62.4 NC_006146.1 + 2762 0.76 0.170856
Target:  5'- gGggGaaGGCCGCGCGccGCCCCCcGGGACc -3'
miRNA:   3'- aCuuC--CCGGUGCGC--CGGGGGuCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 898 0.76 0.170856
Target:  5'- gGggGaaGGCCGCGCGccGCCCCCcGGGACc -3'
miRNA:   3'- aCuuC--CCGGUGCGC--CGGGGGuCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 142584 0.75 0.192721
Target:  5'- cGGgcGGGGCCA-G-GGCCUCCAGAGGCa -3'
miRNA:   3'- aCU--UCCCGGUgCgCCGGGGGUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 157973 0.75 0.192721
Target:  5'- cGGgcGGGGCCA-G-GGCCUCCAGAGGCa -3'
miRNA:   3'- aCU--UCCCGGUgCgCCGGGGGUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 151817 0.75 0.192721
Target:  5'- cGGgcGGGGCCA-G-GGCCUCCAGAGGCa -3'
miRNA:   3'- aCU--UCCCGGUgCgCCGGGGGUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 154895 0.75 0.192721
Target:  5'- cGGgcGGGGCCA-G-GGCCUCCAGAGGCa -3'
miRNA:   3'- aCU--UCCCGGUgCgCCGGGGGUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 145662 0.75 0.192721
Target:  5'- cGGgcGGGGCCA-G-GGCCUCCAGAGGCa -3'
miRNA:   3'- aCU--UCCCGGUgCgCCGGGGGUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 148739 0.75 0.192721
Target:  5'- cGGgcGGGGCCA-G-GGCCUCCAGAGGCa -3'
miRNA:   3'- aCU--UCCCGGUgCgCCGGGGGUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 169389 0.75 0.202133
Target:  5'- cGccGGGCCGCGCccccGGCCCCUcuccugGGAGGCc -3'
miRNA:   3'- aCuuCCCGGUGCG----CCGGGGG------UCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 167525 0.75 0.202133
Target:  5'- cGccGGGCCGCGCccccGGCCCCUcuccugGGAGGCc -3'
miRNA:   3'- aCuuCCCGGUGCG----CCGGGGG------UCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 168457 0.75 0.202133
Target:  5'- cGccGGGCCGCGCccccGGCCCCUcuccugGGAGGCc -3'
miRNA:   3'- aCuuCCCGGUGCG----CCGGGGG------UCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 170320 0.75 0.202133
Target:  5'- cGccGGGCCGCGCccccGGCCCCUcuccugGGAGGCc -3'
miRNA:   3'- aCuuCCCGGUGCG----CCGGGGG------UCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 56870 0.75 0.211943
Target:  5'- gGcuGGGgCugGCGGCCCCCguguucGGGGACu -3'
miRNA:   3'- aCuuCCCgGugCGCCGGGGG------UCUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.