miRNA display CGI


Results 1 - 20 of 317 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28729 3' -62.4 NC_006146.1 + 360 0.66 0.643893
Target:  5'- gGGAGGGCgGCGacaaucgcCGcGCCCCCucAGGCc -3'
miRNA:   3'- aCUUCCCGgUGC--------GC-CGGGGGucUCUG- -5'
28729 3' -62.4 NC_006146.1 + 479 0.67 0.55324
Target:  5'- cGccGGGCCcCGCGggaccccccccuccGCCCCC-GAGGCc -3'
miRNA:   3'- aCuuCCCGGuGCGC--------------CGGGGGuCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 556 0.66 0.663477
Target:  5'- ---cGGGCCuccacACGUGGCCuCCCAGGn-- -3'
miRNA:   3'- acuuCCCGG-----UGCGCCGG-GGGUCUcug -5'
28729 3' -62.4 NC_006146.1 + 582 0.72 0.319502
Target:  5'- aGAGGGGCCggggGCGCGGCCCggcgCCAGc--- -3'
miRNA:   3'- aCUUCCCGG----UGCGCCGGG----GGUCucug -5'
28729 3' -62.4 NC_006146.1 + 898 0.76 0.170856
Target:  5'- gGggGaaGGCCGCGCGccGCCCCCcGGGACc -3'
miRNA:   3'- aCuuC--CCGGUGCGC--CGGGGGuCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 1120 0.71 0.355857
Target:  5'- aGAAGGGucuucuCCACGCGccgguGCCCCCGcGAGGg -3'
miRNA:   3'- aCUUCCC------GGUGCGC-----CGGGGGU-CUCUg -5'
28729 3' -62.4 NC_006146.1 + 1232 0.7 0.403189
Target:  5'- gGgcGGGCCACGCGcGCCCgCCAc---- -3'
miRNA:   3'- aCuuCCCGGUGCGC-CGGG-GGUcucug -5'
28729 3' -62.4 NC_006146.1 + 1291 0.66 0.643893
Target:  5'- gGGAGGGCgGCGacaaucgcCGcGCCCCCucAGGCc -3'
miRNA:   3'- aCUUCCCGgUGC--------GC-CGGGGGucUCUG- -5'
28729 3' -62.4 NC_006146.1 + 1410 0.67 0.55324
Target:  5'- cGccGGGCCcCGCGggaccccccccuccGCCCCC-GAGGCc -3'
miRNA:   3'- aCuuCCCGGuGCGC--------------CGGGGGuCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 1487 0.66 0.663477
Target:  5'- ---cGGGCCuccacACGUGGCCuCCCAGGn-- -3'
miRNA:   3'- acuuCCCGG-----UGCGCCGG-GGGUCUcug -5'
28729 3' -62.4 NC_006146.1 + 1513 0.72 0.319502
Target:  5'- aGAGGGGCCggggGCGCGGCCCggcgCCAGc--- -3'
miRNA:   3'- aCUUCCCGG----UGCGCCGGG----GGUCucug -5'
28729 3' -62.4 NC_006146.1 + 1830 0.76 0.170856
Target:  5'- gGggGaaGGCCGCGCGccGCCCCCcGGGACc -3'
miRNA:   3'- aCuuC--CCGGUGCGC--CGGGGGuCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 2052 0.71 0.355857
Target:  5'- aGAAGGGucuucuCCACGCGccgguGCCCCCGcGAGGg -3'
miRNA:   3'- aCUUCCC------GGUGCGC-----CGGGGGU-CUCUg -5'
28729 3' -62.4 NC_006146.1 + 2164 0.7 0.403189
Target:  5'- gGgcGGGCCACGCGcGCCCgCCAc---- -3'
miRNA:   3'- aCuuCCCGGUGCGC-CGGG-GGUcucug -5'
28729 3' -62.4 NC_006146.1 + 2223 0.66 0.643893
Target:  5'- gGGAGGGCgGCGacaaucgcCGcGCCCCCucAGGCc -3'
miRNA:   3'- aCUUCCCGgUGC--------GC-CGGGGGucUCUG- -5'
28729 3' -62.4 NC_006146.1 + 2342 0.67 0.55324
Target:  5'- cGccGGGCCcCGCGggaccccccccuccGCCCCC-GAGGCc -3'
miRNA:   3'- aCuuCCCGGuGCGC--------------CGGGGGuCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 2419 0.66 0.663477
Target:  5'- ---cGGGCCuccacACGUGGCCuCCCAGGn-- -3'
miRNA:   3'- acuuCCCGG-----UGCGCCGG-GGGUCUcug -5'
28729 3' -62.4 NC_006146.1 + 2445 0.72 0.319502
Target:  5'- aGAGGGGCCggggGCGCGGCCCggcgCCAGc--- -3'
miRNA:   3'- aCUUCCCGG----UGCGCCGGG----GGUCucug -5'
28729 3' -62.4 NC_006146.1 + 2762 0.76 0.170856
Target:  5'- gGggGaaGGCCGCGCGccGCCCCCcGGGACc -3'
miRNA:   3'- aCuuC--CCGGUGCGC--CGGGGGuCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 2985 0.72 0.326545
Target:  5'- aGAAGGGucucuCCACGCGccgguGCCCCCGcGAGGg -3'
miRNA:   3'- aCUUCCC-----GGUGCGC-----CGGGGGU-CUCUg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.