Results 1 - 20 of 317 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28729 | 3' | -62.4 | NC_006146.1 | + | 360 | 0.66 | 0.643893 |
Target: 5'- gGGAGGGCgGCGacaaucgcCGcGCCCCCucAGGCc -3' miRNA: 3'- aCUUCCCGgUGC--------GC-CGGGGGucUCUG- -5' |
|||||||
28729 | 3' | -62.4 | NC_006146.1 | + | 479 | 0.67 | 0.55324 |
Target: 5'- cGccGGGCCcCGCGggaccccccccuccGCCCCC-GAGGCc -3' miRNA: 3'- aCuuCCCGGuGCGC--------------CGGGGGuCUCUG- -5' |
|||||||
28729 | 3' | -62.4 | NC_006146.1 | + | 556 | 0.66 | 0.663477 |
Target: 5'- ---cGGGCCuccacACGUGGCCuCCCAGGn-- -3' miRNA: 3'- acuuCCCGG-----UGCGCCGG-GGGUCUcug -5' |
|||||||
28729 | 3' | -62.4 | NC_006146.1 | + | 582 | 0.72 | 0.319502 |
Target: 5'- aGAGGGGCCggggGCGCGGCCCggcgCCAGc--- -3' miRNA: 3'- aCUUCCCGG----UGCGCCGGG----GGUCucug -5' |
|||||||
28729 | 3' | -62.4 | NC_006146.1 | + | 898 | 0.76 | 0.170856 |
Target: 5'- gGggGaaGGCCGCGCGccGCCCCCcGGGACc -3' miRNA: 3'- aCuuC--CCGGUGCGC--CGGGGGuCUCUG- -5' |
|||||||
28729 | 3' | -62.4 | NC_006146.1 | + | 1120 | 0.71 | 0.355857 |
Target: 5'- aGAAGGGucuucuCCACGCGccgguGCCCCCGcGAGGg -3' miRNA: 3'- aCUUCCC------GGUGCGC-----CGGGGGU-CUCUg -5' |
|||||||
28729 | 3' | -62.4 | NC_006146.1 | + | 1232 | 0.7 | 0.403189 |
Target: 5'- gGgcGGGCCACGCGcGCCCgCCAc---- -3' miRNA: 3'- aCuuCCCGGUGCGC-CGGG-GGUcucug -5' |
|||||||
28729 | 3' | -62.4 | NC_006146.1 | + | 1291 | 0.66 | 0.643893 |
Target: 5'- gGGAGGGCgGCGacaaucgcCGcGCCCCCucAGGCc -3' miRNA: 3'- aCUUCCCGgUGC--------GC-CGGGGGucUCUG- -5' |
|||||||
28729 | 3' | -62.4 | NC_006146.1 | + | 1410 | 0.67 | 0.55324 |
Target: 5'- cGccGGGCCcCGCGggaccccccccuccGCCCCC-GAGGCc -3' miRNA: 3'- aCuuCCCGGuGCGC--------------CGGGGGuCUCUG- -5' |
|||||||
28729 | 3' | -62.4 | NC_006146.1 | + | 1487 | 0.66 | 0.663477 |
Target: 5'- ---cGGGCCuccacACGUGGCCuCCCAGGn-- -3' miRNA: 3'- acuuCCCGG-----UGCGCCGG-GGGUCUcug -5' |
|||||||
28729 | 3' | -62.4 | NC_006146.1 | + | 1513 | 0.72 | 0.319502 |
Target: 5'- aGAGGGGCCggggGCGCGGCCCggcgCCAGc--- -3' miRNA: 3'- aCUUCCCGG----UGCGCCGGG----GGUCucug -5' |
|||||||
28729 | 3' | -62.4 | NC_006146.1 | + | 1830 | 0.76 | 0.170856 |
Target: 5'- gGggGaaGGCCGCGCGccGCCCCCcGGGACc -3' miRNA: 3'- aCuuC--CCGGUGCGC--CGGGGGuCUCUG- -5' |
|||||||
28729 | 3' | -62.4 | NC_006146.1 | + | 2052 | 0.71 | 0.355857 |
Target: 5'- aGAAGGGucuucuCCACGCGccgguGCCCCCGcGAGGg -3' miRNA: 3'- aCUUCCC------GGUGCGC-----CGGGGGU-CUCUg -5' |
|||||||
28729 | 3' | -62.4 | NC_006146.1 | + | 2164 | 0.7 | 0.403189 |
Target: 5'- gGgcGGGCCACGCGcGCCCgCCAc---- -3' miRNA: 3'- aCuuCCCGGUGCGC-CGGG-GGUcucug -5' |
|||||||
28729 | 3' | -62.4 | NC_006146.1 | + | 2223 | 0.66 | 0.643893 |
Target: 5'- gGGAGGGCgGCGacaaucgcCGcGCCCCCucAGGCc -3' miRNA: 3'- aCUUCCCGgUGC--------GC-CGGGGGucUCUG- -5' |
|||||||
28729 | 3' | -62.4 | NC_006146.1 | + | 2342 | 0.67 | 0.55324 |
Target: 5'- cGccGGGCCcCGCGggaccccccccuccGCCCCC-GAGGCc -3' miRNA: 3'- aCuuCCCGGuGCGC--------------CGGGGGuCUCUG- -5' |
|||||||
28729 | 3' | -62.4 | NC_006146.1 | + | 2419 | 0.66 | 0.663477 |
Target: 5'- ---cGGGCCuccacACGUGGCCuCCCAGGn-- -3' miRNA: 3'- acuuCCCGG-----UGCGCCGG-GGGUCUcug -5' |
|||||||
28729 | 3' | -62.4 | NC_006146.1 | + | 2445 | 0.72 | 0.319502 |
Target: 5'- aGAGGGGCCggggGCGCGGCCCggcgCCAGc--- -3' miRNA: 3'- aCUUCCCGG----UGCGCCGGG----GGUCucug -5' |
|||||||
28729 | 3' | -62.4 | NC_006146.1 | + | 2762 | 0.76 | 0.170856 |
Target: 5'- gGggGaaGGCCGCGCGccGCCCCCcGGGACc -3' miRNA: 3'- aCuuC--CCGGUGCGC--CGGGGGuCUCUG- -5' |
|||||||
28729 | 3' | -62.4 | NC_006146.1 | + | 2985 | 0.72 | 0.326545 |
Target: 5'- aGAAGGGucucuCCACGCGccgguGCCCCCGcGAGGg -3' miRNA: 3'- aCUUCCC-----GGUGCGC-----CGGGGGU-CUCUg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home