miRNA display CGI


Results 21 - 40 of 317 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28729 3' -62.4 NC_006146.1 + 158722 0.66 0.653693
Target:  5'- uUGuAGGaGCC-CGaGGCCCCC-GAGAUc -3'
miRNA:   3'- -ACuUCC-CGGuGCgCCGGGGGuCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 134137 0.66 0.653693
Target:  5'- --uAGGGCCacccccuuACGCGGCCUgCGGAa-- -3'
miRNA:   3'- acuUCCCGG--------UGCGCCGGGgGUCUcug -5'
28729 3' -62.4 NC_006146.1 + 36240 0.66 0.653693
Target:  5'- gGAGGaGGCaGgGCGGCUUCUGGAGAg -3'
miRNA:   3'- aCUUC-CCGgUgCGCCGGGGGUCUCUg -5'
28729 3' -62.4 NC_006146.1 + 141469 0.66 0.653693
Target:  5'- cGGAGGGCCugGC--CUgCgGGGGACa -3'
miRNA:   3'- aCUUCCCGGugCGccGGgGgUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 123401 0.66 0.653693
Target:  5'- gGAAcuGGCCGCgGCGGCCgaagaCCAGAucGGCg -3'
miRNA:   3'- aCUUc-CCGGUG-CGCCGGg----GGUCU--CUG- -5'
28729 3' -62.4 NC_006146.1 + 156694 0.66 0.653693
Target:  5'- -uGGGGGUCGgGCuGGCCUgCCAGGGGg -3'
miRNA:   3'- acUUCCCGGUgCG-CCGGG-GGUCUCUg -5'
28729 3' -62.4 NC_006146.1 + 153617 0.66 0.653693
Target:  5'- -uGGGGGUCGgGCuGGCCUgCCAGGGGg -3'
miRNA:   3'- acUUCCCGGUgCG-CCGGG-GGUCUCUg -5'
28729 3' -62.4 NC_006146.1 + 150539 0.66 0.653693
Target:  5'- -uGGGGGUCGgGCuGGCCUgCCAGGGGg -3'
miRNA:   3'- acUUCCCGGUgCG-CCGGG-GGUCUCUg -5'
28729 3' -62.4 NC_006146.1 + 147461 0.66 0.653693
Target:  5'- -uGGGGGUCGgGCuGGCCUgCCAGGGGg -3'
miRNA:   3'- acUUCCCGGUgCG-CCGGG-GGUCUCUg -5'
28729 3' -62.4 NC_006146.1 + 144383 0.66 0.653693
Target:  5'- -uGGGGGUCGgGCuGGCCUgCCAGGGGg -3'
miRNA:   3'- acUUCCCGGUgCG-CCGGG-GGUCUCUg -5'
28729 3' -62.4 NC_006146.1 + 141305 0.66 0.653693
Target:  5'- -uGGGGGUCGgGCuGGCCUgCCAGGGGg -3'
miRNA:   3'- acUUCCCGGUgCG-CCGGG-GGUCUCUg -5'
28729 3' -62.4 NC_006146.1 + 100069 0.66 0.653693
Target:  5'- ---cGGGCC-CGCuuggcccuuGGCCCCagacaUAGAGACu -3'
miRNA:   3'- acuuCCCGGuGCG---------CCGGGG-----GUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 156858 0.66 0.653693
Target:  5'- cGGAGGGCCugGC--CUgCgGGGGACa -3'
miRNA:   3'- aCUUCCCGGugCGccGGgGgUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 153780 0.66 0.653693
Target:  5'- cGGAGGGCCugGC--CUgCgGGGGACa -3'
miRNA:   3'- aCUUCCCGGugCGccGGgGgUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 150702 0.66 0.653693
Target:  5'- cGGAGGGCCugGC--CUgCgGGGGACa -3'
miRNA:   3'- aCUUCCCGGugCGccGGgGgUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 147625 0.66 0.653693
Target:  5'- cGGAGGGCCugGC--CUgCgGGGGACa -3'
miRNA:   3'- aCUUCCCGGugCGccGGgGgUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 144547 0.66 0.653693
Target:  5'- cGGAGGGCCugGC--CUgCgGGGGACa -3'
miRNA:   3'- aCUUCCCGGugCGccGGgGgUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 2223 0.66 0.643893
Target:  5'- gGGAGGGCgGCGacaaucgcCGcGCCCCCucAGGCc -3'
miRNA:   3'- aCUUCCCGgUGC--------GC-CGGGGGucUCUG- -5'
28729 3' -62.4 NC_006146.1 + 3155 0.66 0.643893
Target:  5'- gGGAGGGCgGCGacaaucgcCGcGCCCCCucAGGCc -3'
miRNA:   3'- aCUUCCCGgUGC--------GC-CGGGGGucUCUG- -5'
28729 3' -62.4 NC_006146.1 + 25898 0.66 0.643893
Target:  5'- gGAcaGGGGCCucccaG-GGCCcuccaguccagaCCCAGAGACg -3'
miRNA:   3'- aCU--UCCCGGug---CgCCGG------------GGGUCUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.