miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28729 5' -52.6 NC_006146.1 + 125722 0.67 0.971588
Target:  5'- -cGUCgaugggaGGCCAGGUGCUCaaaGgaCCa -3'
miRNA:   3'- caCAGa------CUGGUCCACGAGaaaCgaGG- -5'
28729 5' -52.6 NC_006146.1 + 101960 0.67 0.9686
Target:  5'- ---cCUGGCUAGGgGCUCcggGCUCUg -3'
miRNA:   3'- cacaGACUGGUCCaCGAGaaaCGAGG- -5'
28729 5' -52.6 NC_006146.1 + 160952 0.67 0.965396
Target:  5'- -gGUCgccaUGGCCAGGcuuuucGCUCagcUGCUCCu -3'
miRNA:   3'- caCAG----ACUGGUCCa-----CGAGaa-ACGAGG- -5'
28729 5' -52.6 NC_006146.1 + 155242 0.68 0.950291
Target:  5'- -gGUCagggcGugCAGGUGCUCggcGCUCa -3'
miRNA:   3'- caCAGa----CugGUCCACGAGaaaCGAGg -5'
28729 5' -52.6 NC_006146.1 + 65115 0.69 0.914482
Target:  5'- -cGUCUGggagcccuggguGCCcuuGGUGCUCUUggaGCUCUu -3'
miRNA:   3'- caCAGAC------------UGGu--CCACGAGAAa--CGAGG- -5'
28729 5' -52.6 NC_006146.1 + 86086 0.74 0.669677
Target:  5'- aUGUCUaGGCCAGGgggGCUCUcgaGCUCa -3'
miRNA:   3'- cACAGA-CUGGUCCa--CGAGAaa-CGAGg -5'
28729 5' -52.6 NC_006146.1 + 33195 0.75 0.63831
Target:  5'- -gGUcCUGGgccuCCGGGUGCUCcuggUGCUCCg -3'
miRNA:   3'- caCA-GACU----GGUCCACGAGaa--ACGAGG- -5'
28729 5' -52.6 NC_006146.1 + 167207 1.11 0.00453
Target:  5'- uGUGUCUGACCAGGUGCUCUUUGCUCCc -3'
miRNA:   3'- -CACAGACUGGUCCACGAGAAACGAGG- -5'
28729 5' -52.6 NC_006146.1 + 116658 0.7 0.888557
Target:  5'- -cGcCUGACCGGGgccgcccagagGCUC--UGCUCCc -3'
miRNA:   3'- caCaGACUGGUCCa----------CGAGaaACGAGG- -5'
28729 5' -52.6 NC_006146.1 + 50186 0.67 0.965396
Target:  5'- gGUGaUCUcccgGAUCAGGUGC----UGCUCCa -3'
miRNA:   3'- -CAC-AGA----CUGGUCCACGagaaACGAGG- -5'
28729 5' -52.6 NC_006146.1 + 57820 0.67 0.965396
Target:  5'- --uUCgaGGCCGGGUGCUCcaacCUCCa -3'
miRNA:   3'- cacAGa-CUGGUCCACGAGaaacGAGG- -5'
28729 5' -52.6 NC_006146.1 + 42062 0.67 0.9686
Target:  5'- uGUGcCUGGCC-GG-GCUUaccUGCUCCu -3'
miRNA:   3'- -CACaGACUGGuCCaCGAGaa-ACGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.