Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28729 | 5' | -52.6 | NC_006146.1 | + | 125722 | 0.67 | 0.971588 |
Target: 5'- -cGUCgaugggaGGCCAGGUGCUCaaaGgaCCa -3' miRNA: 3'- caCAGa------CUGGUCCACGAGaaaCgaGG- -5' |
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28729 | 5' | -52.6 | NC_006146.1 | + | 101960 | 0.67 | 0.9686 |
Target: 5'- ---cCUGGCUAGGgGCUCcggGCUCUg -3' miRNA: 3'- cacaGACUGGUCCaCGAGaaaCGAGG- -5' |
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28729 | 5' | -52.6 | NC_006146.1 | + | 160952 | 0.67 | 0.965396 |
Target: 5'- -gGUCgccaUGGCCAGGcuuuucGCUCagcUGCUCCu -3' miRNA: 3'- caCAG----ACUGGUCCa-----CGAGaa-ACGAGG- -5' |
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28729 | 5' | -52.6 | NC_006146.1 | + | 155242 | 0.68 | 0.950291 |
Target: 5'- -gGUCagggcGugCAGGUGCUCggcGCUCa -3' miRNA: 3'- caCAGa----CugGUCCACGAGaaaCGAGg -5' |
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28729 | 5' | -52.6 | NC_006146.1 | + | 65115 | 0.69 | 0.914482 |
Target: 5'- -cGUCUGggagcccuggguGCCcuuGGUGCUCUUggaGCUCUu -3' miRNA: 3'- caCAGAC------------UGGu--CCACGAGAAa--CGAGG- -5' |
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28729 | 5' | -52.6 | NC_006146.1 | + | 86086 | 0.74 | 0.669677 |
Target: 5'- aUGUCUaGGCCAGGgggGCUCUcgaGCUCa -3' miRNA: 3'- cACAGA-CUGGUCCa--CGAGAaa-CGAGg -5' |
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28729 | 5' | -52.6 | NC_006146.1 | + | 33195 | 0.75 | 0.63831 |
Target: 5'- -gGUcCUGGgccuCCGGGUGCUCcuggUGCUCCg -3' miRNA: 3'- caCA-GACU----GGUCCACGAGaa--ACGAGG- -5' |
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28729 | 5' | -52.6 | NC_006146.1 | + | 167207 | 1.11 | 0.00453 |
Target: 5'- uGUGUCUGACCAGGUGCUCUUUGCUCCc -3' miRNA: 3'- -CACAGACUGGUCCACGAGAAACGAGG- -5' |
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28729 | 5' | -52.6 | NC_006146.1 | + | 116658 | 0.7 | 0.888557 |
Target: 5'- -cGcCUGACCGGGgccgcccagagGCUC--UGCUCCc -3' miRNA: 3'- caCaGACUGGUCCa----------CGAGaaACGAGG- -5' |
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28729 | 5' | -52.6 | NC_006146.1 | + | 50186 | 0.67 | 0.965396 |
Target: 5'- gGUGaUCUcccgGAUCAGGUGC----UGCUCCa -3' miRNA: 3'- -CAC-AGA----CUGGUCCACGagaaACGAGG- -5' |
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28729 | 5' | -52.6 | NC_006146.1 | + | 57820 | 0.67 | 0.965396 |
Target: 5'- --uUCgaGGCCGGGUGCUCcaacCUCCa -3' miRNA: 3'- cacAGa-CUGGUCCACGAGaaacGAGG- -5' |
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28729 | 5' | -52.6 | NC_006146.1 | + | 42062 | 0.67 | 0.9686 |
Target: 5'- uGUGcCUGGCC-GG-GCUUaccUGCUCCu -3' miRNA: 3'- -CACaGACUGGuCCaCGAGaa-ACGAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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