miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2873 3' -63.8 NC_001493.1 + 60083 0.66 0.506176
Target:  5'- gGUGACCGugacGGGUUGGCGaGGUcGAGg- -3'
miRNA:   3'- -CACUGGCcc--CCCGACCGC-CCA-CUCag -5'
2873 3' -63.8 NC_001493.1 + 124817 0.66 0.496886
Target:  5'- -gGACCGGGGaGGCgGGCGuGGggcugGAcuaccugcGUCu -3'
miRNA:   3'- caCUGGCCCC-CCGaCCGC-CCa----CU--------CAG- -5'
2873 3' -63.8 NC_001493.1 + 9263 0.66 0.496886
Target:  5'- -gGACCGGGGaGGCgGGCGuGGggcugGAcuaccugcGUCu -3'
miRNA:   3'- caCUGGCCCC-CCGaCCGC-CCa----CU--------CAG- -5'
2873 3' -63.8 NC_001493.1 + 19603 0.66 0.487675
Target:  5'- -aGugCGGGGGGUgacgugggGGCcuauaucagGGGUGGGa- -3'
miRNA:   3'- caCugGCCCCCCGa-------CCG---------CCCACUCag -5'
2873 3' -63.8 NC_001493.1 + 129664 0.66 0.487675
Target:  5'- cGUGAUCGuGGGGGUggUGGUGGcGaUGGGg- -3'
miRNA:   3'- -CACUGGC-CCCCCG--ACCGCC-C-ACUCag -5'
2873 3' -63.8 NC_001493.1 + 14109 0.66 0.487675
Target:  5'- cGUGAUCGuGGGGGUggUGGUGGcGaUGGGg- -3'
miRNA:   3'- -CACUGGC-CCCCCG--ACCGCC-C-ACUCag -5'
2873 3' -63.8 NC_001493.1 + 24099 0.67 0.451676
Target:  5'- ----aCGGGGGGCUGGCGa-UGuGUCc -3'
miRNA:   3'- cacugGCCCCCCGACCGCccACuCAG- -5'
2873 3' -63.8 NC_001493.1 + 36623 0.68 0.41718
Target:  5'- gGUGGCCGuGGGGCU-GUGGGUGuccagGGUa -3'
miRNA:   3'- -CACUGGCcCCCCGAcCGCCCAC-----UCAg -5'
2873 3' -63.8 NC_001493.1 + 111828 0.68 0.376402
Target:  5'- -cGACCGGGGcugguGCUcGCGGGUacgcccgaaGAGUCg -3'
miRNA:   3'- caCUGGCCCCc----CGAcCGCCCA---------CUCAG- -5'
2873 3' -63.8 NC_001493.1 + 102475 0.7 0.310058
Target:  5'- gGUGGaaGGuGGGGCcucGGCGGGUcgggGGGUCg -3'
miRNA:   3'- -CACUggCC-CCCCGa--CCGCCCA----CUCAG- -5'
2873 3' -63.8 NC_001493.1 + 115709 0.71 0.276596
Target:  5'- -aGACCccaaGGGGGCgugggggUGGCgaGGGUGGGUCu -3'
miRNA:   3'- caCUGGc---CCCCCG-------ACCG--CCCACUCAG- -5'
2873 3' -63.8 NC_001493.1 + 120850 1.07 0.000652
Target:  5'- gGUGACCGGGGGGCUGGCGGGUGAGUCc -3'
miRNA:   3'- -CACUGGCCCCCCGACCGCCCACUCAG- -5'
2873 3' -63.8 NC_001493.1 + 5296 1.07 0.000652
Target:  5'- gGUGACCGGGGGGCUGGCGGGUGAGUCc -3'
miRNA:   3'- -CACUGGCCCCCCGACCGCCCACUCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.