Results 61 - 80 of 123 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28730 | 3' | -59.6 | NC_006146.1 | + | 136015 | 0.68 | 0.649912 |
Target: 5'- -aGCUCGGGGCC--GGGGGCCggGUg -3' miRNA: 3'- caUGGGCUCUGGaaCCCCCGGagCAg -5' |
|||||||
28730 | 3' | -59.6 | NC_006146.1 | + | 136108 | 0.68 | 0.649912 |
Target: 5'- -aGCUCGGGGCC--GGGGGCCggGUg -3' miRNA: 3'- caUGGGCUCUGGaaCCCCCGGagCAg -5' |
|||||||
28730 | 3' | -59.6 | NC_006146.1 | + | 136201 | 0.68 | 0.649912 |
Target: 5'- -aGCUCGGGGCC--GGGGGCCggGUg -3' miRNA: 3'- caUGGGCUCUGGaaCCCCCGGagCAg -5' |
|||||||
28730 | 3' | -59.6 | NC_006146.1 | + | 136294 | 0.68 | 0.649912 |
Target: 5'- -aGCUCGGGGCC--GGGGGCCggGUg -3' miRNA: 3'- caUGGGCUCUGGaaCCCCCGGagCAg -5' |
|||||||
28730 | 3' | -59.6 | NC_006146.1 | + | 136387 | 0.68 | 0.649912 |
Target: 5'- -aGCUCGGGGCC--GGGGGCCggGUg -3' miRNA: 3'- caUGGGCUCUGGaaCCCCCGGagCAg -5' |
|||||||
28730 | 3' | -59.6 | NC_006146.1 | + | 136480 | 0.68 | 0.649912 |
Target: 5'- -aGCUCGGGGCC--GGGGGCCggGUg -3' miRNA: 3'- caUGGGCUCUGGaaCCCCCGGagCAg -5' |
|||||||
28730 | 3' | -59.6 | NC_006146.1 | + | 136573 | 0.68 | 0.649912 |
Target: 5'- -aGCUCGGGGCC--GGGGGCCggGUg -3' miRNA: 3'- caUGGGCUCUGGaaCCCCCGGagCAg -5' |
|||||||
28730 | 3' | -59.6 | NC_006146.1 | + | 136666 | 0.68 | 0.649912 |
Target: 5'- -aGCUCGGGGCC--GGGGGCCggGUg -3' miRNA: 3'- caUGGGCUCUGGaaCCCCCGGagCAg -5' |
|||||||
28730 | 3' | -59.6 | NC_006146.1 | + | 136758 | 0.68 | 0.649912 |
Target: 5'- -aGCUCGGGGCC--GGGGGCCggGUg -3' miRNA: 3'- caUGGGCUCUGGaaCCCCCGGagCAg -5' |
|||||||
28730 | 3' | -59.6 | NC_006146.1 | + | 136851 | 0.68 | 0.649912 |
Target: 5'- -aGCUCGGGGCC--GGGGGCCggGUg -3' miRNA: 3'- caUGGGCUCUGGaaCCCCCGGagCAg -5' |
|||||||
28730 | 3' | -59.6 | NC_006146.1 | + | 136944 | 0.68 | 0.649912 |
Target: 5'- -aGCUCGGGGCC--GGGGGCCggGUg -3' miRNA: 3'- caUGGGCUCUGGaaCCCCCGGagCAg -5' |
|||||||
28730 | 3' | -59.6 | NC_006146.1 | + | 137028 | 0.72 | 0.447737 |
Target: 5'- -cACCCcggggagGAGGCCgggUGGGGGCCUgGg- -3' miRNA: 3'- caUGGG-------CUCUGGa--ACCCCCGGAgCag -5' |
|||||||
28730 | 3' | -59.6 | NC_006146.1 | + | 137037 | 0.68 | 0.649912 |
Target: 5'- -aGCUCGGGGCC--GGGGGCCggGUg -3' miRNA: 3'- caUGGGCUCUGGaaCCCCCGGagCAg -5' |
|||||||
28730 | 3' | -59.6 | NC_006146.1 | + | 137130 | 0.68 | 0.649912 |
Target: 5'- -aGCUCGGGGCC--GGGGGCCggGUg -3' miRNA: 3'- caUGGGCUCUGGaaCCCCCGGagCAg -5' |
|||||||
28730 | 3' | -59.6 | NC_006146.1 | + | 137217 | 0.68 | 0.649912 |
Target: 5'- --cCCCGGGgaggaaGCCgggUGGGGGCCUgGg- -3' miRNA: 3'- cauGGGCUC------UGGa--ACCCCCGGAgCag -5' |
|||||||
28730 | 3' | -59.6 | NC_006146.1 | + | 137223 | 0.68 | 0.649912 |
Target: 5'- -aGCUCGGGGCC--GGGGGCCggGUg -3' miRNA: 3'- caUGGGCUCUGGaaCCCCCGGagCAg -5' |
|||||||
28730 | 3' | -59.6 | NC_006146.1 | + | 137316 | 0.68 | 0.649912 |
Target: 5'- -aGCUCGGGGCC--GGGGGCCggGUg -3' miRNA: 3'- caUGGGCUCUGGaaCCCCCGGagCAg -5' |
|||||||
28730 | 3' | -59.6 | NC_006146.1 | + | 137409 | 0.68 | 0.649912 |
Target: 5'- -aGCUCGGGGCC--GGGGGCCggGUg -3' miRNA: 3'- caUGGGCUCUGGaaCCCCCGGagCAg -5' |
|||||||
28730 | 3' | -59.6 | NC_006146.1 | + | 137502 | 0.68 | 0.649912 |
Target: 5'- -aGCUCGGGGCC--GGGGGCCggGUg -3' miRNA: 3'- caUGGGCUCUGGaaCCCCCGGagCAg -5' |
|||||||
28730 | 3' | -59.6 | NC_006146.1 | + | 137723 | 0.68 | 0.643957 |
Target: 5'- gGUGCCCGggccuacccgguucuGGAgCUccUGGGGGUccgCUCGUCc -3' miRNA: 3'- -CAUGGGC---------------UCUgGA--ACCCCCG---GAGCAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home