Results 101 - 120 of 123 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28730 | 3' | -59.6 | NC_006146.1 | + | 156023 | 0.72 | 0.448623 |
Target: 5'- -gGCCUGGGGCCUcGGaGGGCCUgGa- -3' miRNA: 3'- caUGGGCUCUGGAaCC-CCCGGAgCag -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 157627 | 0.66 | 0.774832 |
Target: 5'- -gACCCGAGggGCUcUGGGGcGCCg-GUCc -3' miRNA: 3'- caUGGGCUC--UGGaACCCC-CGGagCAG- -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 157893 | 0.66 | 0.792709 |
Target: 5'- -gGCUCGAGAgCUUGGuguccgggaagaGGGUCUUGUg -3' miRNA: 3'- caUGGGCUCUgGAACC------------CCCGGAGCAg -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 162396 | 0.69 | 0.6102 |
Target: 5'- -cGCCCGGGACCccGGuGGGCCagGa- -3' miRNA: 3'- caUGGGCUCUGGaaCC-CCCGGagCag -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 163802 | 0.67 | 0.728184 |
Target: 5'- -aGCCUG-GGCCUUGGcGGGCCa---- -3' miRNA: 3'- caUGGGCuCUGGAACC-CCCGGagcag -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 164177 | 0.69 | 0.590409 |
Target: 5'- -cACCCGggucaccuuccGGACCUUGuGGGCCUUGa- -3' miRNA: 3'- caUGGGC-----------UCUGGAACcCCCGGAGCag -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 166995 | 1.09 | 0.001483 |
Target: 5'- gGUACCCGAGACCUUGGGGGCCUCGUCg -3' miRNA: 3'- -CAUGGGCUCUGGAACCCCCGGAGCAG- -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 167270 | 0.68 | 0.639986 |
Target: 5'- -gGCCCGGGGCCgcgcgUGGGgauGGCCggCGg- -3' miRNA: 3'- caUGGGCUCUGGa----ACCC---CCGGa-GCag -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 167305 | 0.66 | 0.783835 |
Target: 5'- -gGgCCGGcGCCUgcaggGGGGGCCggcggggCGUCc -3' miRNA: 3'- caUgGGCUcUGGAa----CCCCCGGa------GCAG- -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 167405 | 0.69 | 0.600294 |
Target: 5'- -gGgCCGGGGCCUggcGGGGGCCagCG-Cg -3' miRNA: 3'- caUgGGCUCUGGAa--CCCCCGGa-GCaG- -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 167595 | 0.73 | 0.397277 |
Target: 5'- -aGgCCG-GGCCUccccUGGGGGCCUCGg- -3' miRNA: 3'- caUgGGCuCUGGA----ACCCCCGGAGCag -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 167654 | 0.69 | 0.6102 |
Target: 5'- cGUGCCgGGGGCCc-GGGGGCg-UGUCc -3' miRNA: 3'- -CAUGGgCUCUGGaaCCCCCGgaGCAG- -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 168202 | 0.68 | 0.639986 |
Target: 5'- -gGCCCGGGGCCgcgcgUGGGgauGGCCggCGg- -3' miRNA: 3'- caUGGGCUCUGGa----ACCC---CCGGa-GCag -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 168237 | 0.66 | 0.783835 |
Target: 5'- -gGgCCGGcGCCUgcaggGGGGGCCggcggggCGUCc -3' miRNA: 3'- caUgGGCUcUGGAa----CCCCCGGa------GCAG- -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 168337 | 0.69 | 0.600294 |
Target: 5'- -gGgCCGGGGCCUggcGGGGGCCagCG-Cg -3' miRNA: 3'- caUgGGCUCUGGAa--CCCCCGGa-GCaG- -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 168527 | 0.73 | 0.397277 |
Target: 5'- -aGgCCG-GGCCUccccUGGGGGCCUCGg- -3' miRNA: 3'- caUgGGCuCUGGA----ACCCCCGGAGCag -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 169134 | 0.68 | 0.639986 |
Target: 5'- -gGCCCGGGGCCgcgcgUGGGgauGGCCggCGg- -3' miRNA: 3'- caUGGGCUCUGGa----ACCC---CCGGa-GCag -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 169169 | 0.66 | 0.783835 |
Target: 5'- -gGgCCGGcGCCUgcaggGGGGGCCggcggggCGUCc -3' miRNA: 3'- caUgGGCUcUGGAa----CCCCCGGa------GCAG- -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 169269 | 0.69 | 0.600294 |
Target: 5'- -gGgCCGGGGCCUggcGGGGGCCagCG-Cg -3' miRNA: 3'- caUgGGCUCUGGAa--CCCCCGGa-GCaG- -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 169459 | 0.73 | 0.397277 |
Target: 5'- -aGgCCG-GGCCUccccUGGGGGCCUCGg- -3' miRNA: 3'- caUgGGCuCUGGA----ACCCCCGGAGCag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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