Results 101 - 120 of 123 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28730 | 3' | -59.6 | NC_006146.1 | + | 137028 | 0.72 | 0.447737 |
Target: 5'- -cACCCcggggagGAGGCCgggUGGGGGCCUgGg- -3' miRNA: 3'- caUGGG-------CUCUGGa--ACCCCCGGAgCag -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 71861 | 0.73 | 0.397277 |
Target: 5'- -cACCCGccGGGCCcugGGGGGCCUCu-- -3' miRNA: 3'- caUGGGC--UCUGGaa-CCCCCGGAGcag -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 70042 | 0.81 | 0.136031 |
Target: 5'- -gACCCGAGACCUUccGGcGGGCCUUGaUCa -3' miRNA: 3'- caUGGGCUCUGGAA--CC-CCCGGAGC-AG- -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 155867 | 0.82 | 0.113999 |
Target: 5'- -gGCCCGAGACC-UGGGGGCC-CGg- -3' miRNA: 3'- caUGGGCUCUGGaACCCCCGGaGCag -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 152789 | 0.82 | 0.113999 |
Target: 5'- -gGCCCGAGACC-UGGGGGCC-CGg- -3' miRNA: 3'- caUGGGCUCUGGaACCCCCGGaGCag -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 149711 | 0.82 | 0.113999 |
Target: 5'- -gGCCCGAGACC-UGGGGGCC-CGg- -3' miRNA: 3'- caUGGGCUCUGGaACCCCCGGaGCag -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 146634 | 0.82 | 0.113999 |
Target: 5'- -gGCCCGAGACC-UGGGGGCC-CGg- -3' miRNA: 3'- caUGGGCUCUGGaACCCCCGGaGCag -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 143556 | 0.82 | 0.113999 |
Target: 5'- -gGCCCGAGACC-UGGGGGCC-CGg- -3' miRNA: 3'- caUGGGCUCUGGaACCCCCGGaGCag -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 149867 | 0.72 | 0.448623 |
Target: 5'- -gGCCUGGGGCCUcGGaGGGCCUgGa- -3' miRNA: 3'- caUGGGCUCUGGAaCC-CCCGGAgCag -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 152945 | 0.72 | 0.448623 |
Target: 5'- -gGCCUGGGGCCUcGGaGGGCCUgGa- -3' miRNA: 3'- caUGGGCUCUGGAaCC-CCCGGAgCag -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 156023 | 0.72 | 0.448623 |
Target: 5'- -gGCCUGGGGCCUcGGaGGGCCUgGa- -3' miRNA: 3'- caUGGGCUCUGGAaCC-CCCGGAgCag -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 137217 | 0.68 | 0.649912 |
Target: 5'- --cCCCGGGgaggaaGCCgggUGGGGGCCUgGg- -3' miRNA: 3'- cauGGGCUC------UGGa--ACCCCCGGAgCag -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 95997 | 0.68 | 0.649912 |
Target: 5'- cUGCCUGGGGCCUUGGGa-UCUCGa- -3' miRNA: 3'- cAUGGGCUCUGGAACCCccGGAGCag -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 40878 | 0.68 | 0.639986 |
Target: 5'- gGU-CCgGAGACggagccGGGGCCUCGUCu -3' miRNA: 3'- -CAuGGgCUCUGgaac--CCCCGGAGCAG- -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 20123 | 0.68 | 0.639986 |
Target: 5'- -gGCCCGGcACCUgcUGGGGGCCa---- -3' miRNA: 3'- caUGGGCUcUGGA--ACCCCCGGagcag -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 12167 | 0.7 | 0.551218 |
Target: 5'- -gACCCcuacguGAUCUcGGGGGCCUCGg- -3' miRNA: 3'- caUGGGcu----CUGGAaCCCCCGGAGCag -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 50814 | 0.7 | 0.551218 |
Target: 5'- gGU-CCCaggggGGGAuCCUUGGGGGCUcCGUCu -3' miRNA: 3'- -CAuGGG-----CUCU-GGAACCCCCGGaGCAG- -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 14671 | 0.71 | 0.512855 |
Target: 5'- --cCCCGuccacGGCCgaGGGGGCCcgCGUCu -3' miRNA: 3'- cauGGGCu----CUGGaaCCCCCGGa-GCAG- -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 143711 | 0.72 | 0.457534 |
Target: 5'- -aGCCUGGGGCCUcGGaGGGCCUgGa- -3' miRNA: 3'- caUGGGCUCUGGAaCC-CCCGGAgCag -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 41048 | 0.72 | 0.457534 |
Target: 5'- cGU-CCgCGGcGGCCcUGGGGGCCUCGg- -3' miRNA: 3'- -CAuGG-GCU-CUGGaACCCCCGGAGCag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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