miRNA display CGI


Results 1 - 20 of 123 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28730 3' -59.6 NC_006146.1 + 166995 1.09 0.001483
Target:  5'- gGUACCCGAGACCUUGGGGGCCUCGUCg -3'
miRNA:   3'- -CAUGGGCUCUGGAACCCCCGGAGCAG- -5'
28730 3' -59.6 NC_006146.1 + 149711 0.82 0.113999
Target:  5'- -gGCCCGAGACC-UGGGGGCC-CGg- -3'
miRNA:   3'- caUGGGCUCUGGaACCCCCGGaGCag -5'
28730 3' -59.6 NC_006146.1 + 152789 0.82 0.113999
Target:  5'- -gGCCCGAGACC-UGGGGGCC-CGg- -3'
miRNA:   3'- caUGGGCUCUGGaACCCCCGGaGCag -5'
28730 3' -59.6 NC_006146.1 + 155867 0.82 0.113999
Target:  5'- -gGCCCGAGACC-UGGGGGCC-CGg- -3'
miRNA:   3'- caUGGGCUCUGGaACCCCCGGaGCag -5'
28730 3' -59.6 NC_006146.1 + 146634 0.82 0.113999
Target:  5'- -gGCCCGAGACC-UGGGGGCC-CGg- -3'
miRNA:   3'- caUGGGCUCUGGaACCCCCGGaGCag -5'
28730 3' -59.6 NC_006146.1 + 143556 0.82 0.113999
Target:  5'- -gGCCCGAGACC-UGGGGGCC-CGg- -3'
miRNA:   3'- caUGGGCUCUGGaACCCCCGGaGCag -5'
28730 3' -59.6 NC_006146.1 + 70042 0.81 0.136031
Target:  5'- -gACCCGAGACCUUccGGcGGGCCUUGaUCa -3'
miRNA:   3'- caUGGGCUCUGGAA--CC-CCCGGAGC-AG- -5'
28730 3' -59.6 NC_006146.1 + 169459 0.73 0.397277
Target:  5'- -aGgCCG-GGCCUccccUGGGGGCCUCGg- -3'
miRNA:   3'- caUgGGCuCUGGA----ACCCCCGGAGCag -5'
28730 3' -59.6 NC_006146.1 + 170390 0.73 0.397277
Target:  5'- -aGgCCG-GGCCUccccUGGGGGCCUCGg- -3'
miRNA:   3'- caUgGGCuCUGGA----ACCCCCGGAGCag -5'
28730 3' -59.6 NC_006146.1 + 168527 0.73 0.397277
Target:  5'- -aGgCCG-GGCCUccccUGGGGGCCUCGg- -3'
miRNA:   3'- caUgGGCuCUGGA----ACCCCCGGAGCag -5'
28730 3' -59.6 NC_006146.1 + 71861 0.73 0.397277
Target:  5'- -cACCCGccGGGCCcugGGGGGCCUCu-- -3'
miRNA:   3'- caUGGGC--UCUGGaa-CCCCCGGAGcag -5'
28730 3' -59.6 NC_006146.1 + 167595 0.73 0.397277
Target:  5'- -aGgCCG-GGCCUccccUGGGGGCCUCGg- -3'
miRNA:   3'- caUgGGCuCUGGA----ACCCCCGGAGCag -5'
28730 3' -59.6 NC_006146.1 + 146847 0.73 0.405571
Target:  5'- -aGCCCG-GGCCUggcucGGGGCCgCGUCa -3'
miRNA:   3'- caUGGGCuCUGGAac---CCCCGGaGCAG- -5'
28730 3' -59.6 NC_006146.1 + 31463 0.72 0.422482
Target:  5'- --cCCCGGGcACCgUGGGGGCCUUcUCc -3'
miRNA:   3'- cauGGGCUC-UGGaACCCCCGGAGcAG- -5'
28730 3' -59.6 NC_006146.1 + 137028 0.72 0.447737
Target:  5'- -cACCCcggggagGAGGCCgggUGGGGGCCUgGg- -3'
miRNA:   3'- caUGGG-------CUCUGGa--ACCCCCGGAgCag -5'
28730 3' -59.6 NC_006146.1 + 146789 0.72 0.448623
Target:  5'- -gGCCUGGGGCCUcGGaGGGCCUgGa- -3'
miRNA:   3'- caUGGGCUCUGGAaCC-CCCGGAgCag -5'
28730 3' -59.6 NC_006146.1 + 149867 0.72 0.448623
Target:  5'- -gGCCUGGGGCCUcGGaGGGCCUgGa- -3'
miRNA:   3'- caUGGGCUCUGGAaCC-CCCGGAgCag -5'
28730 3' -59.6 NC_006146.1 + 152945 0.72 0.448623
Target:  5'- -gGCCUGGGGCCUcGGaGGGCCUgGa- -3'
miRNA:   3'- caUGGGCUCUGGAaCC-CCCGGAgCag -5'
28730 3' -59.6 NC_006146.1 + 156023 0.72 0.448623
Target:  5'- -gGCCUGGGGCCUcGGaGGGCCUgGa- -3'
miRNA:   3'- caUGGGCUCUGGAaCC-CCCGGAgCag -5'
28730 3' -59.6 NC_006146.1 + 41048 0.72 0.457534
Target:  5'- cGU-CCgCGGcGGCCcUGGGGGCCUCGg- -3'
miRNA:   3'- -CAuGG-GCU-CUGGaACCCCCGGAGCag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.