miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28730 3' -59.6 NC_006146.1 + 509 0.66 0.792709
Target:  5'- --cCCCGAGGCCcccagGGGaGGCC-CGg- -3'
miRNA:   3'- cauGGGCUCUGGaa---CCC-CCGGaGCag -5'
28730 3' -59.6 NC_006146.1 + 919 0.66 0.801447
Target:  5'- --cCCCGGGACCccGGGcgcgcgccGGCCUccCGUCc -3'
miRNA:   3'- cauGGGCUCUGGaaCCC--------CCGGA--GCAG- -5'
28730 3' -59.6 NC_006146.1 + 1440 0.66 0.792709
Target:  5'- --cCCCGAGGCCcccagGGGaGGCC-CGg- -3'
miRNA:   3'- cauGGGCUCUGGaa---CCC-CCGGaGCag -5'
28730 3' -59.6 NC_006146.1 + 1851 0.66 0.801447
Target:  5'- --cCCCGGGACCccGGGcgcgcgccGGCCUccCGUCc -3'
miRNA:   3'- cauGGGCUCUGGaaCCC--------CCGGA--GCAG- -5'
28730 3' -59.6 NC_006146.1 + 2372 0.66 0.792709
Target:  5'- --cCCCGAGGCCcccagGGGaGGCC-CGg- -3'
miRNA:   3'- cauGGGCUCUGGaa---CCC-CCGGaGCag -5'
28730 3' -59.6 NC_006146.1 + 2783 0.66 0.801447
Target:  5'- --cCCCGGGACCccGGGcgcgcgccGGCCUccCGUCc -3'
miRNA:   3'- cauGGGCUCUGGaaCCC--------CCGGA--GCAG- -5'
28730 3' -59.6 NC_006146.1 + 3304 0.66 0.792709
Target:  5'- --cCCCGAGGCCcccagGGGaGGCC-CGg- -3'
miRNA:   3'- cauGGGCUCUGGaa---CCC-CCGGaGCag -5'
28730 3' -59.6 NC_006146.1 + 3715 0.66 0.801447
Target:  5'- --cCCCGGGACCccGGGcgcgcgccGGCCUccCGUCc -3'
miRNA:   3'- cauGGGCUCUGGaaCCC--------CCGGA--GCAG- -5'
28730 3' -59.6 NC_006146.1 + 12019 0.66 0.756475
Target:  5'- gGUGCCCGAGACCggcagcuacgUGGcGGGUg-CGg- -3'
miRNA:   3'- -CAUGGGCUCUGGa---------ACC-CCCGgaGCag -5'
28730 3' -59.6 NC_006146.1 + 12167 0.7 0.551218
Target:  5'- -gACCCcuacguGAUCUcGGGGGCCUCGg- -3'
miRNA:   3'- caUGGGcu----CUGGAaCCCCCGGAGCag -5'
28730 3' -59.6 NC_006146.1 + 12949 0.69 0.630053
Target:  5'- -cGCCCGGuGGCCUUGGGGuaGCuCUggaGUCa -3'
miRNA:   3'- caUGGGCU-CUGGAACCCC--CG-GAg--CAG- -5'
28730 3' -59.6 NC_006146.1 + 14671 0.71 0.512855
Target:  5'- --cCCCGuccacGGCCgaGGGGGCCcgCGUCu -3'
miRNA:   3'- cauGGGCu----CUGGaaCCCCCGGa-GCAG- -5'
28730 3' -59.6 NC_006146.1 + 14844 0.68 0.669717
Target:  5'- -gGCCCGGGGCCgcGGGaGGCCg---- -3'
miRNA:   3'- caUGGGCUCUGGaaCCC-CCGGagcag -5'
28730 3' -59.6 NC_006146.1 + 16026 0.68 0.669717
Target:  5'- -cGCCCGGuGGCCUUGGGGuaGCuCUgggaGUCa -3'
miRNA:   3'- caUGGGCU-CUGGAACCCC--CG-GAg---CAG- -5'
28730 3' -59.6 NC_006146.1 + 19104 0.68 0.669717
Target:  5'- -cGCCCGGuGGCCUUGGGGuaGCuCUgggaGUCa -3'
miRNA:   3'- caUGGGCU-CUGGAACCCC--CG-GAg---CAG- -5'
28730 3' -59.6 NC_006146.1 + 20123 0.68 0.639986
Target:  5'- -gGCCCGGcACCUgcUGGGGGCCa---- -3'
miRNA:   3'- caUGGGCUcUGGA--ACCCCCGGagcag -5'
28730 3' -59.6 NC_006146.1 + 22182 0.68 0.669717
Target:  5'- -cGCCCGGuGGCCUUGGGGuaGCuCUgggaGUCa -3'
miRNA:   3'- caUGGGCU-CUGGAACCCC--CG-GAg---CAG- -5'
28730 3' -59.6 NC_006146.1 + 25260 0.68 0.669717
Target:  5'- -cGCCCGGuGGCCUUGGGGuaGCuCUgggaGUCa -3'
miRNA:   3'- caUGGGCU-CUGGAACCCC--CG-GAg---CAG- -5'
28730 3' -59.6 NC_006146.1 + 28338 0.68 0.669717
Target:  5'- -cGCCCGGuGGCCUUGGGGuaGCuCUgggaGUCa -3'
miRNA:   3'- caUGGGCU-CUGGAACCCC--CG-GAg---CAG- -5'
28730 3' -59.6 NC_006146.1 + 31463 0.72 0.422482
Target:  5'- --cCCCGGGcACCgUGGGGGCCUUcUCc -3'
miRNA:   3'- cauGGGCUC-UGGaACCCCCGGAGcAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.