Results 1 - 20 of 123 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28730 | 3' | -59.6 | NC_006146.1 | + | 167595 | 0.73 | 0.397277 |
Target: 5'- -aGgCCG-GGCCUccccUGGGGGCCUCGg- -3' miRNA: 3'- caUgGGCuCUGGA----ACCCCCGGAGCag -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 170200 | 0.69 | 0.600294 |
Target: 5'- -gGgCCGGGGCCUggcGGGGGCCagCG-Cg -3' miRNA: 3'- caUgGGCUCUGGAa--CCCCCGGa-GCaG- -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 162396 | 0.69 | 0.6102 |
Target: 5'- -cGCCCGGGACCccGGuGGGCCagGa- -3' miRNA: 3'- caUGGGCUCUGGaaCC-CCCGGagCag -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 157893 | 0.66 | 0.792709 |
Target: 5'- -gGCUCGAGAgCUUGGuguccgggaagaGGGUCUUGUg -3' miRNA: 3'- caUGGGCUCUgGAACC------------CCCGGAGCAg -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 146847 | 0.73 | 0.405571 |
Target: 5'- -aGCCCG-GGCCUggcucGGGGCCgCGUCa -3' miRNA: 3'- caUGGGCuCUGGAac---CCCCGGaGCAG- -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 31463 | 0.72 | 0.422482 |
Target: 5'- --cCCCGGGcACCgUGGGGGCCUUcUCc -3' miRNA: 3'- cauGGGCUC-UGGaACCCCCGGAGcAG- -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 48554 | 0.71 | 0.503432 |
Target: 5'- cGUugCCGccucGACCUUGgaaucauccGGGGCCUCGg- -3' miRNA: 3'- -CAugGGCu---CUGGAAC---------CCCCGGAGCag -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 53461 | 0.7 | 0.560951 |
Target: 5'- cUGCCCGGGAggcgcGGGuGCCUCGUCg -3' miRNA: 3'- cAUGGGCUCUggaacCCC-CGGAGCAG- -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 47871 | 0.69 | 0.579569 |
Target: 5'- -cGCCCG-GACC-UGGGccgccucGGCCUCGgUCa -3' miRNA: 3'- caUGGGCuCUGGaACCC-------CCGGAGC-AG- -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 169269 | 0.69 | 0.600294 |
Target: 5'- -gGgCCGGGGCCUggcGGGGGCCagCG-Cg -3' miRNA: 3'- caUgGGCUCUGGAa--CCCCCGGa-GCaG- -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 164177 | 0.69 | 0.590409 |
Target: 5'- -cACCCGggucaccuuccGGACCUUGuGGGCCUUGa- -3' miRNA: 3'- caUGGGC-----------UCUGGAACcCCCGGAGCag -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 155794 | 0.7 | 0.570732 |
Target: 5'- -cGCUCGGuGGCCcUGGGGGCCaccgaGUCa -3' miRNA: 3'- caUGGGCU-CUGGaACCCCCGGag---CAG- -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 168527 | 0.73 | 0.397277 |
Target: 5'- -aGgCCG-GGCCUccccUGGGGGCCUCGg- -3' miRNA: 3'- caUgGGCuCUGGA----ACCCCCGGAGCag -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 167405 | 0.69 | 0.600294 |
Target: 5'- -gGgCCGGGGCCUggcGGGGGCCagCG-Cg -3' miRNA: 3'- caUgGGCUCUGGAa--CCCCCGGa-GCaG- -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 169459 | 0.73 | 0.397277 |
Target: 5'- -aGgCCG-GGCCUccccUGGGGGCCUCGg- -3' miRNA: 3'- caUgGGCuCUGGA----ACCCCCGGAGCag -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 81534 | 0.7 | 0.560951 |
Target: 5'- -cACCaCGAGACCUc--GGGCCUCGg- -3' miRNA: 3'- caUGG-GCUCUGGAaccCCCGGAGCag -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 168337 | 0.69 | 0.600294 |
Target: 5'- -gGgCCGGGGCCUggcGGGGGCCagCG-Cg -3' miRNA: 3'- caUgGGCUCUGGAa--CCCCCGGa-GCaG- -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 167654 | 0.69 | 0.6102 |
Target: 5'- cGUGCCgGGGGCCc-GGGGGCg-UGUCc -3' miRNA: 3'- -CAUGGgCUCUGGaaCCCCCGgaGCAG- -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 170390 | 0.73 | 0.397277 |
Target: 5'- -aGgCCG-GGCCUccccUGGGGGCCUCGg- -3' miRNA: 3'- caUgGGCuCUGGA----ACCCCCGGAGCag -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 145267 | 0.72 | 0.457534 |
Target: 5'- -aGCgCCGuGAUCUUggagcugagGGGGGCCUCGUa -3' miRNA: 3'- caUG-GGCuCUGGAA---------CCCCCGGAGCAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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