miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28730 3' -59.6 NC_006146.1 + 12019 0.66 0.756475
Target:  5'- gGUGCCCGAGACCggcagcuacgUGGcGGGUg-CGg- -3'
miRNA:   3'- -CAUGGGCUCUGGa---------ACC-CCCGgaGCag -5'
28730 3' -59.6 NC_006146.1 + 106480 0.67 0.747137
Target:  5'- -gGCgCCGAGACCccaaguaucaugUgcacGGGGGCCaaGUCa -3'
miRNA:   3'- caUG-GGCUCUGG------------Aa---CCCCCGGagCAG- -5'
28730 3' -59.6 NC_006146.1 + 94161 0.67 0.747137
Target:  5'- cGUGCCCGuGGGCCUccacgaagcUGucGGCCUCGa- -3'
miRNA:   3'- -CAUGGGC-UCUGGA---------ACccCCGGAGCag -5'
28730 3' -59.6 NC_006146.1 + 120222 0.67 0.737704
Target:  5'- gGUGCCUguGGGGCC---GGGGUUUCGUCu -3'
miRNA:   3'- -CAUGGG--CUCUGGaacCCCCGGAGCAG- -5'
28730 3' -59.6 NC_006146.1 + 38364 0.67 0.728184
Target:  5'- -gACCCGAGGCCUUcGaGGCCaCGUa -3'
miRNA:   3'- caUGGGCUCUGGAAcCcCCGGaGCAg -5'
28730 3' -59.6 NC_006146.1 + 80559 0.67 0.728184
Target:  5'- gGUACCCGAGACCUaaUGagcaGGCCUU-UCa -3'
miRNA:   3'- -CAUGGGCUCUGGA--ACcc--CCGGAGcAG- -5'
28730 3' -59.6 NC_006146.1 + 163802 0.67 0.728184
Target:  5'- -aGCCUG-GGCCUUGGcGGGCCa---- -3'
miRNA:   3'- caUGGGCuCUGGAACC-CCCGGagcag -5'
28730 3' -59.6 NC_006146.1 + 52396 0.67 0.718586
Target:  5'- aGUACgCCGAGuACg-UGGGGGCC--GUCa -3'
miRNA:   3'- -CAUG-GGCUC-UGgaACCCCCGGagCAG- -5'
28730 3' -59.6 NC_006146.1 + 71248 0.67 0.708919
Target:  5'- --uCCUGGGGCCUggcgggGGGcGGCCUCu-- -3'
miRNA:   3'- cauGGGCUCUGGAa-----CCC-CCGGAGcag -5'
28730 3' -59.6 NC_006146.1 + 58629 0.67 0.699189
Target:  5'- gGUGCCCGGGcAUCUUcacGGGGCUcuUUGUCc -3'
miRNA:   3'- -CAUGGGCUC-UGGAAc--CCCCGG--AGCAG- -5'
28730 3' -59.6 NC_006146.1 + 117902 0.67 0.699189
Target:  5'- -gGCCCaGGGCCagaaGaGGGGCCUCGa- -3'
miRNA:   3'- caUGGGcUCUGGaa--C-CCCCGGAGCag -5'
28730 3' -59.6 NC_006146.1 + 69848 0.67 0.699189
Target:  5'- -aGCCCGuGGCCcUGGGaGGUCgggCGUa -3'
miRNA:   3'- caUGGGCuCUGGaACCC-CCGGa--GCAg -5'
28730 3' -59.6 NC_006146.1 + 147430 0.67 0.699189
Target:  5'- -aGCCCGuaccuGGCCacGGccaGGGCCUCGUa -3'
miRNA:   3'- caUGGGCu----CUGGaaCC---CCCGGAGCAg -5'
28730 3' -59.6 NC_006146.1 + 151629 0.67 0.699189
Target:  5'- ---aCCGAGACCcggcaGGGGGUCUUgcgGUCa -3'
miRNA:   3'- caugGGCUCUGGaa---CCCCCGGAG---CAG- -5'
28730 3' -59.6 NC_006146.1 + 118679 0.68 0.689407
Target:  5'- cUGCCCGAGGCCUucgagaUGGaGGacCCUCGg- -3'
miRNA:   3'- cAUGGGCUCUGGA------ACC-CCc-GGAGCag -5'
28730 3' -59.6 NC_006146.1 + 53194 0.68 0.689407
Target:  5'- -gGCCCc-GGCCUUGGGGGgCggCGUg -3'
miRNA:   3'- caUGGGcuCUGGAACCCCCgGa-GCAg -5'
28730 3' -59.6 NC_006146.1 + 138861 0.68 0.679581
Target:  5'- -cGCCCGGgucauGACC-UGGGccagcGCCUCGUCc -3'
miRNA:   3'- caUGGGCU-----CUGGaACCCc----CGGAGCAG- -5'
28730 3' -59.6 NC_006146.1 + 14844 0.68 0.669717
Target:  5'- -gGCCCGGGGCCgcGGGaGGCCg---- -3'
miRNA:   3'- caUGGGCUCUGGaaCCC-CCGGagcag -5'
28730 3' -59.6 NC_006146.1 + 22182 0.68 0.669717
Target:  5'- -cGCCCGGuGGCCUUGGGGuaGCuCUgggaGUCa -3'
miRNA:   3'- caUGGGCU-CUGGAACCCC--CG-GAg---CAG- -5'
28730 3' -59.6 NC_006146.1 + 28338 0.68 0.669717
Target:  5'- -cGCCCGGuGGCCUUGGGGuaGCuCUgggaGUCa -3'
miRNA:   3'- caUGGGCU-CUGGAACCCC--CG-GAg---CAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.