Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28730 | 5' | -55 | NC_006146.1 | + | 10748 | 0.7 | 0.805943 |
Target: 5'- -aGCCGGGGCCAuGCGGCUacaUCUacUUCu -3' miRNA: 3'- agCGGCUCUGGU-CGUCGA---AGAgcAAG- -5' |
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28730 | 5' | -55 | NC_006146.1 | + | 11844 | 0.67 | 0.922958 |
Target: 5'- gCGCCGGGcCCu---GCUUCUCGggCu -3' miRNA: 3'- aGCGGCUCuGGucguCGAAGAGCaaG- -5' |
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28730 | 5' | -55 | NC_006146.1 | + | 12020 | 0.71 | 0.730528 |
Target: 5'- gUGcCCGAGACCGGCAGCUaCguggCGg-- -3' miRNA: 3'- aGC-GGCUCUGGUCGUCGAaGa---GCaag -5' |
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28730 | 5' | -55 | NC_006146.1 | + | 13808 | 0.7 | 0.759708 |
Target: 5'- aCGCCGAGuACUuauugGGCcGCUUCUCGg-- -3' miRNA: 3'- aGCGGCUC-UGG-----UCGuCGAAGAGCaag -5' |
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28730 | 5' | -55 | NC_006146.1 | + | 38674 | 0.67 | 0.89898 |
Target: 5'- gCGCUGcuugaaaaauGGcaACCGGCAGCUUCUC-UUCc -3' miRNA: 3'- aGCGGC----------UC--UGGUCGUCGAAGAGcAAG- -5' |
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28730 | 5' | -55 | NC_006146.1 | + | 41850 | 0.66 | 0.943096 |
Target: 5'- -gGCCGuGGCCAGgGGCUaccggggcCUCGUg- -3' miRNA: 3'- agCGGCuCUGGUCgUCGAa-------GAGCAag -5' |
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28730 | 5' | -55 | NC_006146.1 | + | 45047 | 0.68 | 0.878541 |
Target: 5'- -gGCCGGGGCCggcucccuaggGGCGGCUgaggugcCUCGUg- -3' miRNA: 3'- agCGGCUCUGG-----------UCGUCGAa------GAGCAag -5' |
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28730 | 5' | -55 | NC_006146.1 | + | 47001 | 0.68 | 0.863802 |
Target: 5'- cCGUCG-GACCGGCAGCggCcCGgUCg -3' miRNA: 3'- aGCGGCuCUGGUCGUCGaaGaGCaAG- -5' |
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28730 | 5' | -55 | NC_006146.1 | + | 48758 | 0.66 | 0.938422 |
Target: 5'- gCGCCcGGccuCCAGCAGCcgccgcagcuucUUCUCGUa- -3' miRNA: 3'- aGCGGcUCu--GGUCGUCG------------AAGAGCAag -5' |
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28730 | 5' | -55 | NC_006146.1 | + | 49720 | 0.67 | 0.917322 |
Target: 5'- -aGUCG-GGCCAGgAGCUgguugauuUCUCGUUUc -3' miRNA: 3'- agCGGCuCUGGUCgUCGA--------AGAGCAAG- -5' |
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28730 | 5' | -55 | NC_006146.1 | + | 56870 | 0.66 | 0.933508 |
Target: 5'- -gGCUGGGGCUGGCGGCccccgUGUUCg -3' miRNA: 3'- agCGGCUCUGGUCGUCGaaga-GCAAG- -5' |
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28730 | 5' | -55 | NC_006146.1 | + | 58851 | 0.66 | 0.933508 |
Target: 5'- gCGCCGucaAGGCCGGCAGCccCUUcaUCc -3' miRNA: 3'- aGCGGC---UCUGGUCGUCGaaGAGcaAG- -5' |
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28730 | 5' | -55 | NC_006146.1 | + | 64649 | 0.7 | 0.759707 |
Target: 5'- cCGCCGGGGCCAGgGGCacgUCgcCGUg- -3' miRNA: 3'- aGCGGCUCUGGUCgUCGa--AGa-GCAag -5' |
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28730 | 5' | -55 | NC_006146.1 | + | 66568 | 0.68 | 0.863802 |
Target: 5'- cCGCCaaGGGCCGGCAGCUguaUCGc-- -3' miRNA: 3'- aGCGGc-UCUGGUCGUCGAag-AGCaag -5' |
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28730 | 5' | -55 | NC_006146.1 | + | 67687 | 0.7 | 0.787863 |
Target: 5'- cUCGCgCGAGuCCcgccGCAGCUUUUCGcgCg -3' miRNA: 3'- -AGCG-GCUCuGGu---CGUCGAAGAGCaaG- -5' |
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28730 | 5' | -55 | NC_006146.1 | + | 67890 | 0.71 | 0.720617 |
Target: 5'- -gGCCGAGACCAGCAcgaaCUgggcCUCGUg- -3' miRNA: 3'- agCGGCUCUGGUCGUc---GAa---GAGCAag -5' |
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28730 | 5' | -55 | NC_006146.1 | + | 71693 | 0.65 | 0.951736 |
Target: 5'- gCGCCGAGGCC-GCGGC--CUCc--- -3' miRNA: 3'- aGCGGCUCUGGuCGUCGaaGAGcaag -5' |
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28730 | 5' | -55 | NC_006146.1 | + | 76727 | 0.66 | 0.943097 |
Target: 5'- aCGCuCGAGGCCGaCAGCUUCgUGg-- -3' miRNA: 3'- aGCG-GCUCUGGUcGUCGAAGaGCaag -5' |
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28730 | 5' | -55 | NC_006146.1 | + | 84173 | 0.67 | 0.922958 |
Target: 5'- -gGCCGAGaauGCCGGUAGCgaugCUUGcUCc -3' miRNA: 3'- agCGGCUC---UGGUCGUCGaa--GAGCaAG- -5' |
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28730 | 5' | -55 | NC_006146.1 | + | 100028 | 0.69 | 0.823387 |
Target: 5'- gCGgCGGGGuCC-GCGGCUUCUCGcggUCg -3' miRNA: 3'- aGCgGCUCU-GGuCGUCGAAGAGCa--AG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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