miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28730 5' -55 NC_006146.1 + 47001 0.68 0.863802
Target:  5'- cCGUCG-GACCGGCAGCggCcCGgUCg -3'
miRNA:   3'- aGCGGCuCUGGUCGUCGaaGaGCaAG- -5'
28730 5' -55 NC_006146.1 + 64649 0.7 0.759707
Target:  5'- cCGCCGGGGCCAGgGGCacgUCgcCGUg- -3'
miRNA:   3'- aGCGGCUCUGGUCgUCGa--AGa-GCAag -5'
28730 5' -55 NC_006146.1 + 67890 0.71 0.720617
Target:  5'- -gGCCGAGACCAGCAcgaaCUgggcCUCGUg- -3'
miRNA:   3'- agCGGCUCUGGUCGUc---GAa---GAGCAag -5'
28730 5' -55 NC_006146.1 + 147462 0.72 0.659868
Target:  5'- -gGCCGAGACgGGCAGCcggagCUUGUg- -3'
miRNA:   3'- agCGGCUCUGgUCGUCGaa---GAGCAag -5'
28730 5' -55 NC_006146.1 + 158594 0.78 0.381066
Target:  5'- -aGCCGAGAcagccgcuCCAGCAGgUUCUgGUUCa -3'
miRNA:   3'- agCGGCUCU--------GGUCGUCgAAGAgCAAG- -5'
28730 5' -55 NC_006146.1 + 150186 0.67 0.917321
Target:  5'- cUCGCa-GGccGCCAGCAGCUUCUUa--- -3'
miRNA:   3'- -AGCGgcUC--UGGUCGUCGAAGAGcaag -5'
28730 5' -55 NC_006146.1 + 48758 0.66 0.938422
Target:  5'- gCGCCcGGccuCCAGCAGCcgccgcagcuucUUCUCGUa- -3'
miRNA:   3'- aGCGGcUCu--GGUCGUCG------------AAGAGCAag -5'
28730 5' -55 NC_006146.1 + 159326 0.66 0.933508
Target:  5'- -aGuuGAGGCUGGcCGGCgUCUCGUg- -3'
miRNA:   3'- agCggCUCUGGUC-GUCGaAGAGCAag -5'
28730 5' -55 NC_006146.1 + 56870 0.66 0.933508
Target:  5'- -gGCUGGGGCUGGCGGCccccgUGUUCg -3'
miRNA:   3'- agCGGCUCUGGUCGUCGaaga-GCAAG- -5'
28730 5' -55 NC_006146.1 + 115685 0.68 0.892395
Target:  5'- -aGCUGAGACCGGUgucgauggaGGCcaUCUCGUg- -3'
miRNA:   3'- agCGGCUCUGGUCG---------UCGa-AGAGCAag -5'
28730 5' -55 NC_006146.1 + 141011 0.68 0.871279
Target:  5'- gCGCCGGuGACCugauAGCAGCggUCUCa--- -3'
miRNA:   3'- aGCGGCU-CUGG----UCGUCGa-AGAGcaag -5'
28730 5' -55 NC_006146.1 + 41850 0.66 0.943096
Target:  5'- -gGCCGuGGCCAGgGGCUaccggggcCUCGUg- -3'
miRNA:   3'- agCGGCuCUGGUCgUCGAa-------GAGCAag -5'
28730 5' -55 NC_006146.1 + 45047 0.68 0.878541
Target:  5'- -gGCCGGGGCCggcucccuaggGGCGGCUgaggugcCUCGUg- -3'
miRNA:   3'- agCGGCUCUGG-----------UCGUCGAa------GAGCAag -5'
28730 5' -55 NC_006146.1 + 58851 0.66 0.933508
Target:  5'- gCGCCGucaAGGCCGGCAGCccCUUcaUCc -3'
miRNA:   3'- aGCGGC---UCUGGUCGUCGaaGAGcaAG- -5'
28730 5' -55 NC_006146.1 + 67687 0.7 0.787863
Target:  5'- cUCGCgCGAGuCCcgccGCAGCUUUUCGcgCg -3'
miRNA:   3'- -AGCG-GCUCuGGu---CGUCGAAGAGCaaG- -5'
28730 5' -55 NC_006146.1 + 114300 0.75 0.527665
Target:  5'- aCGCCggcgagGAGACCGGCGGCgggCUCGg-- -3'
miRNA:   3'- aGCGG------CUCUGGUCGUCGaa-GAGCaag -5'
28730 5' -55 NC_006146.1 + 12020 0.71 0.730528
Target:  5'- gUGcCCGAGACCGGCAGCUaCguggCGg-- -3'
miRNA:   3'- aGC-GGCUCUGGUCGUCGAaGa---GCaag -5'
28730 5' -55 NC_006146.1 + 13808 0.7 0.759708
Target:  5'- aCGCCGAGuACUuauugGGCcGCUUCUCGg-- -3'
miRNA:   3'- aGCGGCUC-UGG-----UCGuCGAAGAGCaag -5'
28730 5' -55 NC_006146.1 + 10748 0.7 0.805943
Target:  5'- -aGCCGGGGCCAuGCGGCUacaUCUacUUCu -3'
miRNA:   3'- agCGGCUCUGGU-CGUCGA---AGAgcAAG- -5'
28730 5' -55 NC_006146.1 + 38674 0.67 0.89898
Target:  5'- gCGCUGcuugaaaaauGGcaACCGGCAGCUUCUC-UUCc -3'
miRNA:   3'- aGCGGC----------UC--UGGUCGUCGAAGAGcAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.