Results 21 - 29 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28731 | 3' | -57.1 | NC_006146.1 | + | 117565 | 0.71 | 0.60627 |
Target: 5'- gCUGUucagGGUauggGCCGGCGUGuggaGUCGGGGGuGa -3' miRNA: 3'- -GACG----UCA----UGGCCGCAC----UAGUCCCCuC- -5' |
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28731 | 3' | -57.1 | NC_006146.1 | + | 128787 | 0.71 | 0.595206 |
Target: 5'- -aGCAGgGCCGaaGCGUGAUCGGccacacaGGGAGg -3' miRNA: 3'- gaCGUCaUGGC--CGCACUAGUC-------CCCUC- -5' |
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28731 | 3' | -57.1 | NC_006146.1 | + | 170093 | 0.73 | 0.526872 |
Target: 5'- -gGCGGgagggGCCGGCGccg-CAGGGGGGg -3' miRNA: 3'- gaCGUCa----UGGCCGCacuaGUCCCCUC- -5' |
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28731 | 3' | -57.1 | NC_006146.1 | + | 51192 | 0.73 | 0.525901 |
Target: 5'- uCUGCGG-GCUGGCGUGGUaCAGGGcauccacGAGg -3' miRNA: 3'- -GACGUCaUGGCCGCACUA-GUCCC-------CUC- -5' |
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28731 | 3' | -57.1 | NC_006146.1 | + | 169161 | 0.73 | 0.507582 |
Target: 5'- -gGCGGgagggGCCGGCGccugCAGGGGGGg -3' miRNA: 3'- gaCGUCa----UGGCCGCacuaGUCCCCUC- -5' |
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28731 | 3' | -57.1 | NC_006146.1 | + | 168229 | 0.73 | 0.507582 |
Target: 5'- -gGCGGgagggGCCGGCGccugCAGGGGGGg -3' miRNA: 3'- gaCGUCa----UGGCCGCacuaGUCCCCUC- -5' |
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28731 | 3' | -57.1 | NC_006146.1 | + | 167297 | 0.73 | 0.507582 |
Target: 5'- -gGCGGgagggGCCGGCGccugCAGGGGGGg -3' miRNA: 3'- gaCGUCa----UGGCCGCacuaGUCCCCUC- -5' |
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28731 | 3' | -57.1 | NC_006146.1 | + | 40002 | 0.73 | 0.488598 |
Target: 5'- -cGUAGUgGCCGGUGUGGgcguagCAGGGGGc -3' miRNA: 3'- gaCGUCA-UGGCCGCACUa-----GUCCCCUc -5' |
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28731 | 3' | -57.1 | NC_006146.1 | + | 166644 | 0.97 | 0.017768 |
Target: 5'- uCUGCAGUACCGGCGUGAUCAGGgagcGGAGa -3' miRNA: 3'- -GACGUCAUGGCCGCACUAGUCC----CCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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