miRNA display CGI


Results 21 - 29 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28731 3' -57.1 NC_006146.1 + 117565 0.71 0.60627
Target:  5'- gCUGUucagGGUauggGCCGGCGUGuggaGUCGGGGGuGa -3'
miRNA:   3'- -GACG----UCA----UGGCCGCAC----UAGUCCCCuC- -5'
28731 3' -57.1 NC_006146.1 + 128787 0.71 0.595206
Target:  5'- -aGCAGgGCCGaaGCGUGAUCGGccacacaGGGAGg -3'
miRNA:   3'- gaCGUCaUGGC--CGCACUAGUC-------CCCUC- -5'
28731 3' -57.1 NC_006146.1 + 170093 0.73 0.526872
Target:  5'- -gGCGGgagggGCCGGCGccg-CAGGGGGGg -3'
miRNA:   3'- gaCGUCa----UGGCCGCacuaGUCCCCUC- -5'
28731 3' -57.1 NC_006146.1 + 51192 0.73 0.525901
Target:  5'- uCUGCGG-GCUGGCGUGGUaCAGGGcauccacGAGg -3'
miRNA:   3'- -GACGUCaUGGCCGCACUA-GUCCC-------CUC- -5'
28731 3' -57.1 NC_006146.1 + 169161 0.73 0.507582
Target:  5'- -gGCGGgagggGCCGGCGccugCAGGGGGGg -3'
miRNA:   3'- gaCGUCa----UGGCCGCacuaGUCCCCUC- -5'
28731 3' -57.1 NC_006146.1 + 168229 0.73 0.507582
Target:  5'- -gGCGGgagggGCCGGCGccugCAGGGGGGg -3'
miRNA:   3'- gaCGUCa----UGGCCGCacuaGUCCCCUC- -5'
28731 3' -57.1 NC_006146.1 + 167297 0.73 0.507582
Target:  5'- -gGCGGgagggGCCGGCGccugCAGGGGGGg -3'
miRNA:   3'- gaCGUCa----UGGCCGCacuaGUCCCCUC- -5'
28731 3' -57.1 NC_006146.1 + 40002 0.73 0.488598
Target:  5'- -cGUAGUgGCCGGUGUGGgcguagCAGGGGGc -3'
miRNA:   3'- gaCGUCA-UGGCCGCACUa-----GUCCCCUc -5'
28731 3' -57.1 NC_006146.1 + 166644 0.97 0.017768
Target:  5'- uCUGCAGUACCGGCGUGAUCAGGgagcGGAGa -3'
miRNA:   3'- -GACGUCAUGGCCGCACUAGUCC----CCUC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.