miRNA display CGI


Results 81 - 100 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28731 5' -63 NC_006146.1 + 126173 0.67 0.583742
Target:  5'- -gCCCGCG-GCCaccgcaucAGGCCGgccagcgggGGCCACg -3'
miRNA:   3'- agGGGCGCaCGGc-------UCCGGCa--------CUGGUG- -5'
28731 5' -63 NC_006146.1 + 71673 0.67 0.590468
Target:  5'- -gCCCgagacgguggucggGCGcGCCGAGGCCGcGGCCu- -3'
miRNA:   3'- agGGG--------------CGCaCGGCUCCGGCaCUGGug -5'
28731 5' -63 NC_006146.1 + 18384 0.67 0.593355
Target:  5'- gUCCUgGUG-GCCGGGGUgGUGAUCc- -3'
miRNA:   3'- -AGGGgCGCaCGGCUCCGgCACUGGug -5'
28731 5' -63 NC_006146.1 + 115965 0.67 0.593355
Target:  5'- gCCCCGCGggcagacGUCGAGGCCuacuGCCGg -3'
miRNA:   3'- aGGGGCGCa------CGGCUCCGGcac-UGGUg -5'
28731 5' -63 NC_006146.1 + 168267 0.67 0.593355
Target:  5'- gUCCCCGcCGUGUggaCGAaGCCGUGcuCCAg -3'
miRNA:   3'- -AGGGGC-GCACG---GCUcCGGCACu-GGUg -5'
28731 5' -63 NC_006146.1 + 15929 0.67 0.583742
Target:  5'- gCCCUGCG---CGAGGCCGUgcuGACCGu -3'
miRNA:   3'- aGGGGCGCacgGCUCCGGCA---CUGGUg -5'
28731 5' -63 NC_006146.1 + 135216 0.67 0.54566
Target:  5'- gCCCCGCuccgGCgGGggguGGCCG-GGCCGCu -3'
miRNA:   3'- aGGGGCGca--CGgCU----CCGGCaCUGGUG- -5'
28731 5' -63 NC_006146.1 + 135959 0.67 0.54566
Target:  5'- gCCCCGCuccgGCgGGggguGGCCG-GGCCGCu -3'
miRNA:   3'- aGGGGCGca--CGgCU----CCGGCaCUGGUG- -5'
28731 5' -63 NC_006146.1 + 135866 0.67 0.54566
Target:  5'- gCCCCGCuccgGCgGGggguGGCCG-GGCCGCu -3'
miRNA:   3'- aGGGGCGca--CGgCU----CCGGCaCUGGUG- -5'
28731 5' -63 NC_006146.1 + 135773 0.67 0.54566
Target:  5'- gCCCCGCuccgGCgGGggguGGCCG-GGCCGCu -3'
miRNA:   3'- aGGGGCGca--CGgCU----CCGGCaCUGGUG- -5'
28731 5' -63 NC_006146.1 + 135681 0.67 0.54566
Target:  5'- gCCCCGCuccgGCgGGggguGGCCG-GGCCGCu -3'
miRNA:   3'- aGGGGCGca--CGgCU----CCGGCaCUGGUG- -5'
28731 5' -63 NC_006146.1 + 135588 0.67 0.54566
Target:  5'- gCCCCGCuccgGCgGGggguGGCCG-GGCCGCu -3'
miRNA:   3'- aGGGGCGca--CGgCU----CCGGCaCUGGUG- -5'
28731 5' -63 NC_006146.1 + 135495 0.67 0.54566
Target:  5'- gCCCCGCuccgGCgGGggguGGCCG-GGCCGCu -3'
miRNA:   3'- aGGGGCGca--CGgCU----CCGGCaCUGGUG- -5'
28731 5' -63 NC_006146.1 + 135402 0.67 0.54566
Target:  5'- gCCCCGCuccgGCgGGggguGGCCG-GGCCGCu -3'
miRNA:   3'- aGGGGCGca--CGgCU----CCGGCaCUGGUG- -5'
28731 5' -63 NC_006146.1 + 135309 0.67 0.54566
Target:  5'- gCCCCGCuccgGCgGGggguGGCCG-GGCCGCu -3'
miRNA:   3'- aGGGGCGca--CGgCU----CCGGCaCUGGUG- -5'
28731 5' -63 NC_006146.1 + 116653 0.66 0.641673
Target:  5'- uUUCCCGCcUGaCCGGGGCCGc--CCAg -3'
miRNA:   3'- -AGGGGCGcAC-GGCUCCGGCacuGGUg -5'
28731 5' -63 NC_006146.1 + 18851 0.66 0.641673
Target:  5'- aCCCCggGCGcUGCCGGGGUgGUGgACgUGCg -3'
miRNA:   3'- aGGGG--CGC-ACGGCUCCGgCAC-UG-GUG- -5'
28731 5' -63 NC_006146.1 + 71777 0.66 0.622319
Target:  5'- cCCCUGUGgagacGCCuGAGGCCGgagGGCagGCg -3'
miRNA:   3'- aGGGGCGCa----CGG-CUCCGGCa--CUGg-UG- -5'
28731 5' -63 NC_006146.1 + 127411 0.66 0.622319
Target:  5'- gCCCCGCc-GCCGGaGCCGgugucaacGGCCGCc -3'
miRNA:   3'- aGGGGCGcaCGGCUcCGGCa-------CUGGUG- -5'
28731 5' -63 NC_006146.1 + 169055 0.66 0.612649
Target:  5'- cUCCCGUGUGCCuguggcacccGGCUGUGccccGCCAUg -3'
miRNA:   3'- aGGGGCGCACGGcu--------CCGGCAC----UGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.