Results 61 - 80 of 118 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28731 | 5' | -63 | NC_006146.1 | + | 137539 | 0.67 | 0.54566 |
Target: 5'- gCCCCGCuccgGCgGGggguGGCCG-GGCCGCu -3' miRNA: 3'- aGGGGCGca--CGgCU----CCGGCaCUGGUG- -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 136888 | 0.67 | 0.54566 |
Target: 5'- gCCCCGCuccgGCgGGggguGGCCG-GGCCGCu -3' miRNA: 3'- aGGGGCGca--CGgCU----CCGGCaCUGGUG- -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 136981 | 0.67 | 0.54566 |
Target: 5'- gCCCCGCuccgGCgGGggguGGCCG-GGCCGCu -3' miRNA: 3'- aGGGGCGca--CGgCU----CCGGCaCUGGUG- -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 137353 | 0.67 | 0.54566 |
Target: 5'- gCCCCGCuccgGCgGGggguGGCCG-GGCCGCu -3' miRNA: 3'- aGGGGCGca--CGgCU----CCGGCaCUGGUG- -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 136795 | 0.67 | 0.54566 |
Target: 5'- gCCCCGCuccgGCgGGggguGGCCG-GGCCGCu -3' miRNA: 3'- aGGGGCGca--CGgCU----CCGGCaCUGGUG- -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 137260 | 0.67 | 0.54566 |
Target: 5'- gCCCCGCuccgGCgGGggguGGCCG-GGCCGCu -3' miRNA: 3'- aGGGGCGca--CGgCU----CCGGCaCUGGUG- -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 137167 | 0.67 | 0.54566 |
Target: 5'- gCCCCGCuccgGCgGGggguGGCCG-GGCCGCu -3' miRNA: 3'- aGGGGCGca--CGgCU----CCGGCaCUGGUG- -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 137446 | 0.67 | 0.54566 |
Target: 5'- gCCCCGCuccgGCgGGggguGGCCG-GGCCGCu -3' miRNA: 3'- aGGGGCGca--CGgCU----CCGGCaCUGGUG- -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 61608 | 0.68 | 0.536258 |
Target: 5'- --gCCGCG-GCCGGGGCCGaGAUCc- -3' miRNA: 3'- aggGGCGCaCGGCUCCGGCaCUGGug -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 120500 | 0.68 | 0.536258 |
Target: 5'- gUCCCUgGCG-GCCGAGGaCGcGAgCCGCg -3' miRNA: 3'- -AGGGG-CGCaCGGCUCCgGCaCU-GGUG- -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 136857 | 0.68 | 0.536258 |
Target: 5'- aCCCC-CG-GCCGgcauAGGCCccggGACCACg -3' miRNA: 3'- aGGGGcGCaCGGC----UCCGGca--CUGGUG- -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 47385 | 0.68 | 0.536258 |
Target: 5'- -aCCCGCGacccGCCuGGGGucgaCCGUGGCCAg -3' miRNA: 3'- agGGGCGCa---CGG-CUCC----GGCACUGGUg -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 45080 | 0.68 | 0.523192 |
Target: 5'- gCCUCGUggggagagggaggGUGCCGGccauucuccggcucGGCCGgUGACCGCc -3' miRNA: 3'- aGGGGCG-------------CACGGCU--------------CCGGC-ACUGGUG- -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 16157 | 0.68 | 0.517629 |
Target: 5'- aCUCCGCGUaggaaGCCGAGcguugucuuGCUGcUGGCCGCc -3' miRNA: 3'- aGGGGCGCA-----CGGCUC---------CGGC-ACUGGUG- -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 4376 | 0.68 | 0.508411 |
Target: 5'- gCCCCGCGgGCUccccAGGCCGacGCCAUg -3' miRNA: 3'- aGGGGCGCaCGGc---UCCGGCacUGGUG- -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 117274 | 0.68 | 0.508411 |
Target: 5'- gCCCCGCGauccUGCCGAc-CCGgaGACCACc -3' miRNA: 3'- aGGGGCGC----ACGGCUccGGCa-CUGGUG- -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 104860 | 0.68 | 0.508411 |
Target: 5'- aCUuuGCGUGCCuGAGGCaua-ACCACa -3' miRNA: 3'- aGGggCGCACGG-CUCCGgcacUGGUG- -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 32926 | 0.68 | 0.499263 |
Target: 5'- aCCCCGcCG-GCCcccggGAGGCCc-GGCCGCg -3' miRNA: 3'- aGGGGC-GCaCGG-----CUCCGGcaCUGGUG- -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 168578 | 0.68 | 0.49019 |
Target: 5'- gCCCggCGCGUGCCGggggacccgGGGgCGUGucCCGCg -3' miRNA: 3'- aGGG--GCGCACGGC---------UCCgGCACu-GGUG- -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 170441 | 0.68 | 0.49019 |
Target: 5'- gCCCggCGCGUGCCGggggacccgGGGgCGUGucCCGCg -3' miRNA: 3'- aGGG--GCGCACGGC---------UCCgGCACu-GGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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