Results 101 - 118 of 118 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28731 | 5' | -63 | NC_006146.1 | + | 10339 | 0.7 | 0.428181 |
Target: 5'- gCUCaucaucaGCGUGCUGAGaGCCGUguacgauGACCACu -3' miRNA: 3'- aGGGg------CGCACGGCUC-CGGCA-------CUGGUG- -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 137900 | 0.7 | 0.412384 |
Target: 5'- gUCCCCGUGgacaggGCCGGGGguuCCGgggGcaGCCGCg -3' miRNA: 3'- -AGGGGCGCa-----CGGCUCC---GGCa--C--UGGUG- -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 155138 | 0.7 | 0.403405 |
Target: 5'- gUCCCCGCGgcGUCGcagcagcGGGCCaG-GGCCACg -3' miRNA: 3'- -AGGGGCGCa-CGGC-------UCCGG-CaCUGGUG- -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 114068 | 0.7 | 0.396151 |
Target: 5'- cCCCCGCc-GCCaGAGGCCGccucgggGGCCAg -3' miRNA: 3'- aGGGGCGcaCGG-CUCCGGCa------CUGGUg -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 41654 | 0.7 | 0.3874 |
Target: 5'- -aCCUGUG-GCgCGAGGCCGUGAuaaauacuggaaaCCGCa -3' miRNA: 3'- agGGGCGCaCG-GCUCCGGCACU-------------GGUG- -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 123249 | 0.71 | 0.357417 |
Target: 5'- gCCgCCGCGcuggGCCG-GGCCGcGGCCAg -3' miRNA: 3'- aGG-GGCGCa---CGGCuCCGGCaCUGGUg -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 115542 | 0.71 | 0.349996 |
Target: 5'- gUCCCgCGCGcggugGCgGGGGCUGgaggcGACCGCg -3' miRNA: 3'- -AGGG-GCGCa----CGgCUCCGGCa----CUGGUG- -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 120558 | 0.71 | 0.349996 |
Target: 5'- aUCCCCagGCuG-GCCGAGGCCGcgGAUgGCa -3' miRNA: 3'- -AGGGG--CG-CaCGGCUCCGGCa-CUGgUG- -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 128744 | 0.71 | 0.342685 |
Target: 5'- aUUCCCGCaggggGUGuCCGAGGCCuucuucuggaguGUGGCCAg -3' miRNA: 3'- -AGGGGCG-----CAC-GGCUCCGG------------CACUGGUg -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 132761 | 0.71 | 0.342685 |
Target: 5'- cCCCCauccaCGUGUCaGAGGCCGUGuuccuACCGCu -3' miRNA: 3'- aGGGGc----GCACGG-CUCCGGCAC-----UGGUG- -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 117717 | 0.72 | 0.321418 |
Target: 5'- cCCCCaaG-GCCGGGGCCGaGGCCGa -3' miRNA: 3'- aGGGGcgCaCGGCUCCGGCaCUGGUg -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 42106 | 0.72 | 0.307797 |
Target: 5'- cUCCCUGUGUgGCCGAucacgcuucGGCCcugcUGGCCACa -3' miRNA: 3'- -AGGGGCGCA-CGGCU---------CCGGc---ACUGGUG- -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 127578 | 0.72 | 0.294621 |
Target: 5'- gCCCUGgGcgGCCGAGGCCGcgccGGCCGg -3' miRNA: 3'- aGGGGCgCa-CGGCUCCGGCa---CUGGUg -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 166532 | 0.73 | 0.28189 |
Target: 5'- gCCUgGgGaGCCcgcGGGGCCGUGGCCACg -3' miRNA: 3'- aGGGgCgCaCGG---CUCCGGCACUGGUG- -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 21056 | 0.73 | 0.275689 |
Target: 5'- aCgCUGCGcuucGCCGAGGCCcUGGCCGCc -3' miRNA: 3'- aGgGGCGCa---CGGCUCCGGcACUGGUG- -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 131062 | 0.73 | 0.258324 |
Target: 5'- cCCCCGCcggcccacugugcgGCCGAGGCCGccgGGCCGu -3' miRNA: 3'- aGGGGCGca------------CGGCUCCGGCa--CUGGUg -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 70205 | 0.76 | 0.16148 |
Target: 5'- cCCCCGCaGcGCCGGGuGCCGagGGCCGCg -3' miRNA: 3'- aGGGGCG-CaCGGCUC-CGGCa-CUGGUG- -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 166677 | 1.08 | 0.000963 |
Target: 5'- uUCCCCGCGUGCCGAGGCCGUGACCACc -3' miRNA: 3'- -AGGGGCGCACGGCUCCGGCACUGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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