miRNA display CGI


Results 81 - 100 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28731 5' -63 NC_006146.1 + 18384 0.67 0.593355
Target:  5'- gUCCUgGUG-GCCGGGGUgGUGAUCc- -3'
miRNA:   3'- -AGGGgCGCaCGGCUCCGgCACUGGug -5'
28731 5' -63 NC_006146.1 + 15929 0.67 0.583742
Target:  5'- gCCCUGCG---CGAGGCCGUgcuGACCGu -3'
miRNA:   3'- aGGGGCGCacgGCUCCGGCA---CUGGUg -5'
28731 5' -63 NC_006146.1 + 169055 0.66 0.612649
Target:  5'- cUCCCGUGUGCCuguggcacccGGCUGUGccccGCCAUg -3'
miRNA:   3'- aGGGGCGCACGGcu--------CCGGCAC----UGGUG- -5'
28731 5' -63 NC_006146.1 + 127411 0.66 0.622319
Target:  5'- gCCCCGCc-GCCGGaGCCGgugucaacGGCCGCc -3'
miRNA:   3'- aGGGGCGcaCGGCUcCGGCa-------CUGGUG- -5'
28731 5' -63 NC_006146.1 + 71777 0.66 0.622319
Target:  5'- cCCCUGUGgagacGCCuGAGGCCGgagGGCagGCg -3'
miRNA:   3'- aGGGGCGCa----CGG-CUCCGGCa--CUGg-UG- -5'
28731 5' -63 NC_006146.1 + 109089 0.67 0.574161
Target:  5'- aCCCCGCccGUGCCGu-GCCGgcgcGcCCACu -3'
miRNA:   3'- aGGGGCG--CACGGCucCGGCa---CuGGUG- -5'
28731 5' -63 NC_006146.1 + 114068 0.7 0.396151
Target:  5'- cCCCCGCc-GCCaGAGGCCGccucgggGGCCAg -3'
miRNA:   3'- aGGGGCGcaCGG-CUCCGGCa------CUGGUg -5'
28731 5' -63 NC_006146.1 + 21056 0.73 0.275689
Target:  5'- aCgCUGCGcuucGCCGAGGCCcUGGCCGCc -3'
miRNA:   3'- aGgGGCGCa---CGGCUCCGGcACUGGUG- -5'
28731 5' -63 NC_006146.1 + 166532 0.73 0.28189
Target:  5'- gCCUgGgGaGCCcgcGGGGCCGUGGCCACg -3'
miRNA:   3'- aGGGgCgCaCGG---CUCCGGCACUGGUG- -5'
28731 5' -63 NC_006146.1 + 10339 0.7 0.428181
Target:  5'- gCUCaucaucaGCGUGCUGAGaGCCGUguacgauGACCACu -3'
miRNA:   3'- aGGGg------CGCACGGCUC-CGGCA-------CUGGUG- -5'
28731 5' -63 NC_006146.1 + 57214 0.7 0.429022
Target:  5'- gUCCCCG-G-GCCgGAGGCCG-GGCC-Cg -3'
miRNA:   3'- -AGGGGCgCaCGG-CUCCGGCaCUGGuG- -5'
28731 5' -63 NC_006146.1 + 14101 0.69 0.446049
Target:  5'- gUCCCCaggGCGggaUGUCGGGGCUGcUGGCgGCg -3'
miRNA:   3'- -AGGGG---CGC---ACGGCUCCGGC-ACUGgUG- -5'
28731 5' -63 NC_006146.1 + 24209 0.69 0.446049
Target:  5'- -gCCUGCGagguucUGuuGGGGCCGgGGCCGCc -3'
miRNA:   3'- agGGGCGC------ACggCUCCGGCaCUGGUG- -5'
28731 5' -63 NC_006146.1 + 42752 0.69 0.446049
Target:  5'- aUCgCCUGCGgcagcaggGCCGAcaggugcaggcGGCgCGUGGCCGCc -3'
miRNA:   3'- -AG-GGGCGCa-------CGGCU-----------CCG-GCACUGGUG- -5'
28731 5' -63 NC_006146.1 + 40958 0.69 0.472278
Target:  5'- aCCCCaggucCGUGCCGuAGaccGCCGUGguGCCGCg -3'
miRNA:   3'- aGGGGc----GCACGGC-UC---CGGCAC--UGGUG- -5'
28731 5' -63 NC_006146.1 + 165921 0.69 0.472278
Target:  5'- aCCCCGCGUuagugaaggccGCCagGAGGCucuCGUGGCCc- -3'
miRNA:   3'- aGGGGCGCA-----------CGG--CUCCG---GCACUGGug -5'
28731 5' -63 NC_006146.1 + 126140 0.68 0.49019
Target:  5'- uUCCCCGCccGCCG-GGCCccgacaACCACa -3'
miRNA:   3'- -AGGGGCGcaCGGCuCCGGcac---UGGUG- -5'
28731 5' -63 NC_006146.1 + 32926 0.68 0.499263
Target:  5'- aCCCCGcCG-GCCcccggGAGGCCc-GGCCGCg -3'
miRNA:   3'- aGGGGC-GCaCGG-----CUCCGGcaCUGGUG- -5'
28731 5' -63 NC_006146.1 + 104860 0.68 0.508411
Target:  5'- aCUuuGCGUGCCuGAGGCaua-ACCACa -3'
miRNA:   3'- aGGggCGCACGG-CUCCGgcacUGGUG- -5'
28731 5' -63 NC_006146.1 + 117274 0.68 0.508411
Target:  5'- gCCCCGCGauccUGCCGAc-CCGgaGACCACc -3'
miRNA:   3'- aGGGGCGC----ACGGCUccGGCa-CUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.