Results 101 - 118 of 118 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28731 | 5' | -63 | NC_006146.1 | + | 132761 | 0.71 | 0.342685 |
Target: 5'- cCCCCauccaCGUGUCaGAGGCCGUGuuccuACCGCu -3' miRNA: 3'- aGGGGc----GCACGG-CUCCGGCAC-----UGGUG- -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 128744 | 0.71 | 0.342685 |
Target: 5'- aUUCCCGCaggggGUGuCCGAGGCCuucuucuggaguGUGGCCAg -3' miRNA: 3'- -AGGGGCG-----CAC-GGCUCCGG------------CACUGGUg -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 117717 | 0.72 | 0.321418 |
Target: 5'- cCCCCaaG-GCCGGGGCCGaGGCCGa -3' miRNA: 3'- aGGGGcgCaCGGCUCCGGCaCUGGUg -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 127578 | 0.72 | 0.294621 |
Target: 5'- gCCCUGgGcgGCCGAGGCCGcgccGGCCGg -3' miRNA: 3'- aGGGGCgCa-CGGCUCCGGCa---CUGGUg -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 166532 | 0.73 | 0.28189 |
Target: 5'- gCCUgGgGaGCCcgcGGGGCCGUGGCCACg -3' miRNA: 3'- aGGGgCgCaCGG---CUCCGGCACUGGUG- -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 21056 | 0.73 | 0.275689 |
Target: 5'- aCgCUGCGcuucGCCGAGGCCcUGGCCGCc -3' miRNA: 3'- aGgGGCGCa---CGGCUCCGGcACUGGUG- -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 123249 | 0.71 | 0.357417 |
Target: 5'- gCCgCCGCGcuggGCCG-GGCCGcGGCCAg -3' miRNA: 3'- aGG-GGCGCa---CGGCuCCGGCaCUGGUg -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 41654 | 0.7 | 0.3874 |
Target: 5'- -aCCUGUG-GCgCGAGGCCGUGAuaaauacuggaaaCCGCa -3' miRNA: 3'- agGGGCGCaCG-GCUCCGGCACU-------------GGUG- -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 114068 | 0.7 | 0.396151 |
Target: 5'- cCCCCGCc-GCCaGAGGCCGccucgggGGCCAg -3' miRNA: 3'- aGGGGCGcaCGG-CUCCGGCa------CUGGUg -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 126140 | 0.68 | 0.49019 |
Target: 5'- uUCCCCGCccGCCG-GGCCccgacaACCACa -3' miRNA: 3'- -AGGGGCGcaCGGCuCCGGcac---UGGUG- -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 165921 | 0.69 | 0.472278 |
Target: 5'- aCCCCGCGUuagugaaggccGCCagGAGGCucuCGUGGCCc- -3' miRNA: 3'- aGGGGCGCA-----------CGG--CUCCG---GCACUGGug -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 40958 | 0.69 | 0.472278 |
Target: 5'- aCCCCaggucCGUGCCGuAGaccGCCGUGguGCCGCg -3' miRNA: 3'- aGGGGc----GCACGGC-UC---CGGCAC--UGGUG- -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 42752 | 0.69 | 0.446049 |
Target: 5'- aUCgCCUGCGgcagcaggGCCGAcaggugcaggcGGCgCGUGGCCGCc -3' miRNA: 3'- -AG-GGGCGCa-------CGGCU-----------CCG-GCACUGGUG- -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 24209 | 0.69 | 0.446049 |
Target: 5'- -gCCUGCGagguucUGuuGGGGCCGgGGCCGCc -3' miRNA: 3'- agGGGCGC------ACggCUCCGGCaCUGGUG- -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 14101 | 0.69 | 0.446049 |
Target: 5'- gUCCCCaggGCGggaUGUCGGGGCUGcUGGCgGCg -3' miRNA: 3'- -AGGGG---CGC---ACGGCUCCGGC-ACUGgUG- -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 57214 | 0.7 | 0.429022 |
Target: 5'- gUCCCCG-G-GCCgGAGGCCG-GGCC-Cg -3' miRNA: 3'- -AGGGGCgCaCGG-CUCCGGCaCUGGuG- -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 10339 | 0.7 | 0.428181 |
Target: 5'- gCUCaucaucaGCGUGCUGAGaGCCGUguacgauGACCACu -3' miRNA: 3'- aGGGg------CGCACGGCUC-CGGCA-------CUGGUG- -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 166677 | 1.08 | 0.000963 |
Target: 5'- uUCCCCGCGUGCCGAGGCCGUGACCACc -3' miRNA: 3'- -AGGGGCGCACGGCUCCGGCACUGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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