miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28731 5' -63 NC_006146.1 + 166677 1.08 0.000963
Target:  5'- uUCCCCGCGUGCCGAGGCCGUGACCACc -3'
miRNA:   3'- -AGGGGCGCACGGCUCCGGCACUGGUG- -5'
28731 5' -63 NC_006146.1 + 70205 0.76 0.16148
Target:  5'- cCCCCGCaGcGCCGGGuGCCGagGGCCGCg -3'
miRNA:   3'- aGGGGCG-CaCGGCUC-CGGCa-CUGGUG- -5'
28731 5' -63 NC_006146.1 + 131062 0.73 0.258324
Target:  5'- cCCCCGCcggcccacugugcgGCCGAGGCCGccgGGCCGu -3'
miRNA:   3'- aGGGGCGca------------CGGCUCCGGCa--CUGGUg -5'
28731 5' -63 NC_006146.1 + 21056 0.73 0.275689
Target:  5'- aCgCUGCGcuucGCCGAGGCCcUGGCCGCc -3'
miRNA:   3'- aGgGGCGCa---CGGCUCCGGcACUGGUG- -5'
28731 5' -63 NC_006146.1 + 166532 0.73 0.28189
Target:  5'- gCCUgGgGaGCCcgcGGGGCCGUGGCCACg -3'
miRNA:   3'- aGGGgCgCaCGG---CUCCGGCACUGGUG- -5'
28731 5' -63 NC_006146.1 + 127578 0.72 0.294621
Target:  5'- gCCCUGgGcgGCCGAGGCCGcgccGGCCGg -3'
miRNA:   3'- aGGGGCgCa-CGGCUCCGGCa---CUGGUg -5'
28731 5' -63 NC_006146.1 + 42106 0.72 0.307797
Target:  5'- cUCCCUGUGUgGCCGAucacgcuucGGCCcugcUGGCCACa -3'
miRNA:   3'- -AGGGGCGCA-CGGCU---------CCGGc---ACUGGUG- -5'
28731 5' -63 NC_006146.1 + 117717 0.72 0.321418
Target:  5'- cCCCCaaG-GCCGGGGCCGaGGCCGa -3'
miRNA:   3'- aGGGGcgCaCGGCUCCGGCaCUGGUg -5'
28731 5' -63 NC_006146.1 + 132761 0.71 0.342685
Target:  5'- cCCCCauccaCGUGUCaGAGGCCGUGuuccuACCGCu -3'
miRNA:   3'- aGGGGc----GCACGG-CUCCGGCAC-----UGGUG- -5'
28731 5' -63 NC_006146.1 + 128744 0.71 0.342685
Target:  5'- aUUCCCGCaggggGUGuCCGAGGCCuucuucuggaguGUGGCCAg -3'
miRNA:   3'- -AGGGGCG-----CAC-GGCUCCGG------------CACUGGUg -5'
28731 5' -63 NC_006146.1 + 115542 0.71 0.349996
Target:  5'- gUCCCgCGCGcggugGCgGGGGCUGgaggcGACCGCg -3'
miRNA:   3'- -AGGG-GCGCa----CGgCUCCGGCa----CUGGUG- -5'
28731 5' -63 NC_006146.1 + 120558 0.71 0.349996
Target:  5'- aUCCCCagGCuG-GCCGAGGCCGcgGAUgGCa -3'
miRNA:   3'- -AGGGG--CG-CaCGGCUCCGGCa-CUGgUG- -5'
28731 5' -63 NC_006146.1 + 123249 0.71 0.357417
Target:  5'- gCCgCCGCGcuggGCCG-GGCCGcGGCCAg -3'
miRNA:   3'- aGG-GGCGCa---CGGCuCCGGCaCUGGUg -5'
28731 5' -63 NC_006146.1 + 41654 0.7 0.3874
Target:  5'- -aCCUGUG-GCgCGAGGCCGUGAuaaauacuggaaaCCGCa -3'
miRNA:   3'- agGGGCGCaCG-GCUCCGGCACU-------------GGUG- -5'
28731 5' -63 NC_006146.1 + 114068 0.7 0.396151
Target:  5'- cCCCCGCc-GCCaGAGGCCGccucgggGGCCAg -3'
miRNA:   3'- aGGGGCGcaCGG-CUCCGGCa------CUGGUg -5'
28731 5' -63 NC_006146.1 + 155138 0.7 0.403405
Target:  5'- gUCCCCGCGgcGUCGcagcagcGGGCCaG-GGCCACg -3'
miRNA:   3'- -AGGGGCGCa-CGGC-------UCCGG-CaCUGGUG- -5'
28731 5' -63 NC_006146.1 + 137900 0.7 0.412384
Target:  5'- gUCCCCGUGgacaggGCCGGGGguuCCGgggGcaGCCGCg -3'
miRNA:   3'- -AGGGGCGCa-----CGGCUCC---GGCa--C--UGGUG- -5'
28731 5' -63 NC_006146.1 + 10339 0.7 0.428181
Target:  5'- gCUCaucaucaGCGUGCUGAGaGCCGUguacgauGACCACu -3'
miRNA:   3'- aGGGg------CGCACGGCUC-CGGCA-------CUGGUG- -5'
28731 5' -63 NC_006146.1 + 57214 0.7 0.429022
Target:  5'- gUCCCCG-G-GCCgGAGGCCG-GGCC-Cg -3'
miRNA:   3'- -AGGGGCgCaCGG-CUCCGGCaCUGGuG- -5'
28731 5' -63 NC_006146.1 + 157567 0.7 0.429022
Target:  5'- cCUCCGCGUagGCCGcGGCCGacuCCACc -3'
miRNA:   3'- aGGGGCGCA--CGGCuCCGGCacuGGUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.