Results 1 - 20 of 118 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28731 | 5' | -63 | NC_006146.1 | + | 4376 | 0.68 | 0.508411 |
Target: 5'- gCCCCGCGgGCUccccAGGCCGacGCCAUg -3' miRNA: 3'- aGGGGCGCaCGGc---UCCGGCacUGGUG- -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 10339 | 0.7 | 0.428181 |
Target: 5'- gCUCaucaucaGCGUGCUGAGaGCCGUguacgauGACCACu -3' miRNA: 3'- aGGGg------CGCACGGCUC-CGGCA-------CUGGUG- -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 13308 | 0.66 | 0.650376 |
Target: 5'- cCCCCaCGUGCUGggcaccaGGGCgGUGgagucgGCCGCg -3' miRNA: 3'- aGGGGcGCACGGC-------UCCGgCAC------UGGUG- -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 14101 | 0.69 | 0.446049 |
Target: 5'- gUCCCCaggGCGggaUGUCGGGGCUGcUGGCgGCg -3' miRNA: 3'- -AGGGG---CGC---ACGGCUCCGGC-ACUGgUG- -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 15929 | 0.67 | 0.583742 |
Target: 5'- gCCCUGCG---CGAGGCCGUgcuGACCGu -3' miRNA: 3'- aGGGGCGCacgGCUCCGGCA---CUGGUg -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 16157 | 0.68 | 0.517629 |
Target: 5'- aCUCCGCGUaggaaGCCGAGcguugucuuGCUGcUGGCCGCc -3' miRNA: 3'- aGGGGCGCA-----CGGCUC---------CGGC-ACUGGUG- -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 18384 | 0.67 | 0.593355 |
Target: 5'- gUCCUgGUG-GCCGGGGUgGUGAUCc- -3' miRNA: 3'- -AGGGgCGCaCGGCUCCGgCACUGGug -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 18851 | 0.66 | 0.641673 |
Target: 5'- aCCCCggGCGcUGCCGGGGUgGUGgACgUGCg -3' miRNA: 3'- aGGGG--CGC-ACGGCUCCGgCAC-UG-GUG- -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 21056 | 0.73 | 0.275689 |
Target: 5'- aCgCUGCGcuucGCCGAGGCCcUGGCCGCc -3' miRNA: 3'- aGgGGCGCa---CGGCUCCGGcACUGGUG- -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 24209 | 0.69 | 0.446049 |
Target: 5'- -gCCUGCGagguucUGuuGGGGCCGgGGCCGCc -3' miRNA: 3'- agGGGCGC------ACggCUCCGGCaCUGGUG- -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 31830 | 0.69 | 0.472278 |
Target: 5'- cCCCCGCGccaCCaGGGCCcguaugGUGGCCGCc -3' miRNA: 3'- aGGGGCGCac-GGcUCCGG------CACUGGUG- -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 32926 | 0.68 | 0.499263 |
Target: 5'- aCCCCGcCG-GCCcccggGAGGCCc-GGCCGCg -3' miRNA: 3'- aGGGGC-GCaCGG-----CUCCGGcaCUGGUG- -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 33090 | 0.69 | 0.463447 |
Target: 5'- gCCCUGCGgcuCUGGGGCagccggGUGGCCGCc -3' miRNA: 3'- aGGGGCGCac-GGCUCCGg-----CACUGGUG- -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 33204 | 0.66 | 0.631996 |
Target: 5'- cCUCCGgGUGCuccuggugcucCGGGGCagccggGUGGCCGCc -3' miRNA: 3'- aGGGGCgCACG-----------GCUCCGg-----CACUGGUG- -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 33336 | 0.66 | 0.660999 |
Target: 5'- -gUCCGgGUGCucCGGGGCagccggGUGGCCGCc -3' miRNA: 3'- agGGGCgCACG--GCUCCGg-----CACUGGUG- -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 34068 | 0.67 | 0.583742 |
Target: 5'- gUCCCGUG-GCaCGGGGCCGgggGucccggggggcaGCCGCg -3' miRNA: 3'- aGGGGCGCaCG-GCUCCGGCa--C------------UGGUG- -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 40958 | 0.69 | 0.472278 |
Target: 5'- aCCCCaggucCGUGCCGuAGaccGCCGUGguGCCGCg -3' miRNA: 3'- aGGGGc----GCACGGC-UC---CGGCAC--UGGUG- -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 41654 | 0.7 | 0.3874 |
Target: 5'- -aCCUGUG-GCgCGAGGCCGUGAuaaauacuggaaaCCGCa -3' miRNA: 3'- agGGGCGCaCG-GCUCCGGCACU-------------GGUG- -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 41826 | 0.67 | 0.573205 |
Target: 5'- gUCCCCuuucUGUGaaaacacCCG-GGCCGUGGCCAg -3' miRNA: 3'- -AGGGGc---GCAC-------GGCuCCGGCACUGGUg -5' |
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28731 | 5' | -63 | NC_006146.1 | + | 42106 | 0.72 | 0.307797 |
Target: 5'- cUCCCUGUGUgGCCGAucacgcuucGGCCcugcUGGCCACa -3' miRNA: 3'- -AGGGGCGCA-CGGCU---------CCGGc---ACUGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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