miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28731 5' -63 NC_006146.1 + 4376 0.68 0.508411
Target:  5'- gCCCCGCGgGCUccccAGGCCGacGCCAUg -3'
miRNA:   3'- aGGGGCGCaCGGc---UCCGGCacUGGUG- -5'
28731 5' -63 NC_006146.1 + 10339 0.7 0.428181
Target:  5'- gCUCaucaucaGCGUGCUGAGaGCCGUguacgauGACCACu -3'
miRNA:   3'- aGGGg------CGCACGGCUC-CGGCA-------CUGGUG- -5'
28731 5' -63 NC_006146.1 + 13308 0.66 0.650376
Target:  5'- cCCCCaCGUGCUGggcaccaGGGCgGUGgagucgGCCGCg -3'
miRNA:   3'- aGGGGcGCACGGC-------UCCGgCAC------UGGUG- -5'
28731 5' -63 NC_006146.1 + 14101 0.69 0.446049
Target:  5'- gUCCCCaggGCGggaUGUCGGGGCUGcUGGCgGCg -3'
miRNA:   3'- -AGGGG---CGC---ACGGCUCCGGC-ACUGgUG- -5'
28731 5' -63 NC_006146.1 + 15929 0.67 0.583742
Target:  5'- gCCCUGCG---CGAGGCCGUgcuGACCGu -3'
miRNA:   3'- aGGGGCGCacgGCUCCGGCA---CUGGUg -5'
28731 5' -63 NC_006146.1 + 16157 0.68 0.517629
Target:  5'- aCUCCGCGUaggaaGCCGAGcguugucuuGCUGcUGGCCGCc -3'
miRNA:   3'- aGGGGCGCA-----CGGCUC---------CGGC-ACUGGUG- -5'
28731 5' -63 NC_006146.1 + 18384 0.67 0.593355
Target:  5'- gUCCUgGUG-GCCGGGGUgGUGAUCc- -3'
miRNA:   3'- -AGGGgCGCaCGGCUCCGgCACUGGug -5'
28731 5' -63 NC_006146.1 + 18851 0.66 0.641673
Target:  5'- aCCCCggGCGcUGCCGGGGUgGUGgACgUGCg -3'
miRNA:   3'- aGGGG--CGC-ACGGCUCCGgCAC-UG-GUG- -5'
28731 5' -63 NC_006146.1 + 21056 0.73 0.275689
Target:  5'- aCgCUGCGcuucGCCGAGGCCcUGGCCGCc -3'
miRNA:   3'- aGgGGCGCa---CGGCUCCGGcACUGGUG- -5'
28731 5' -63 NC_006146.1 + 24209 0.69 0.446049
Target:  5'- -gCCUGCGagguucUGuuGGGGCCGgGGCCGCc -3'
miRNA:   3'- agGGGCGC------ACggCUCCGGCaCUGGUG- -5'
28731 5' -63 NC_006146.1 + 31830 0.69 0.472278
Target:  5'- cCCCCGCGccaCCaGGGCCcguaugGUGGCCGCc -3'
miRNA:   3'- aGGGGCGCac-GGcUCCGG------CACUGGUG- -5'
28731 5' -63 NC_006146.1 + 32926 0.68 0.499263
Target:  5'- aCCCCGcCG-GCCcccggGAGGCCc-GGCCGCg -3'
miRNA:   3'- aGGGGC-GCaCGG-----CUCCGGcaCUGGUG- -5'
28731 5' -63 NC_006146.1 + 33090 0.69 0.463447
Target:  5'- gCCCUGCGgcuCUGGGGCagccggGUGGCCGCc -3'
miRNA:   3'- aGGGGCGCac-GGCUCCGg-----CACUGGUG- -5'
28731 5' -63 NC_006146.1 + 33204 0.66 0.631996
Target:  5'- cCUCCGgGUGCuccuggugcucCGGGGCagccggGUGGCCGCc -3'
miRNA:   3'- aGGGGCgCACG-----------GCUCCGg-----CACUGGUG- -5'
28731 5' -63 NC_006146.1 + 33336 0.66 0.660999
Target:  5'- -gUCCGgGUGCucCGGGGCagccggGUGGCCGCc -3'
miRNA:   3'- agGGGCgCACG--GCUCCGg-----CACUGGUG- -5'
28731 5' -63 NC_006146.1 + 34068 0.67 0.583742
Target:  5'- gUCCCGUG-GCaCGGGGCCGgggGucccggggggcaGCCGCg -3'
miRNA:   3'- aGGGGCGCaCG-GCUCCGGCa--C------------UGGUG- -5'
28731 5' -63 NC_006146.1 + 40958 0.69 0.472278
Target:  5'- aCCCCaggucCGUGCCGuAGaccGCCGUGguGCCGCg -3'
miRNA:   3'- aGGGGc----GCACGGC-UC---CGGCAC--UGGUG- -5'
28731 5' -63 NC_006146.1 + 41654 0.7 0.3874
Target:  5'- -aCCUGUG-GCgCGAGGCCGUGAuaaauacuggaaaCCGCa -3'
miRNA:   3'- agGGGCGCaCG-GCUCCGGCACU-------------GGUG- -5'
28731 5' -63 NC_006146.1 + 41826 0.67 0.573205
Target:  5'- gUCCCCuuucUGUGaaaacacCCG-GGCCGUGGCCAg -3'
miRNA:   3'- -AGGGGc---GCAC-------GGCuCCGGCACUGGUg -5'
28731 5' -63 NC_006146.1 + 42106 0.72 0.307797
Target:  5'- cUCCCUGUGUgGCCGAucacgcuucGGCCcugcUGGCCACa -3'
miRNA:   3'- -AGGGGCGCA-CGGCU---------CCGGc---ACUGGUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.