miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28731 5' -63 NC_006146.1 + 70205 0.76 0.16148
Target:  5'- cCCCCGCaGcGCCGGGuGCCGagGGCCGCg -3'
miRNA:   3'- aGGGGCG-CaCGGCUC-CGGCa-CUGGUG- -5'
28731 5' -63 NC_006146.1 + 168578 0.68 0.49019
Target:  5'- gCCCggCGCGUGCCGggggacccgGGGgCGUGucCCGCg -3'
miRNA:   3'- aGGG--GCGCACGGC---------UCCgGCACu-GGUG- -5'
28731 5' -63 NC_006146.1 + 170441 0.68 0.49019
Target:  5'- gCCCggCGCGUGCCGggggacccgGGGgCGUGucCCGCg -3'
miRNA:   3'- aGGG--GCGCACGGC---------UCCgGCACu-GGUG- -5'
28731 5' -63 NC_006146.1 + 33336 0.66 0.660999
Target:  5'- -gUCCGgGUGCucCGGGGCagccggGUGGCCGCc -3'
miRNA:   3'- agGGGCgCACG--GCUCCGg-----CACUGGUG- -5'
28731 5' -63 NC_006146.1 + 137900 0.7 0.412384
Target:  5'- gUCCCCGUGgacaggGCCGGGGguuCCGgggGcaGCCGCg -3'
miRNA:   3'- -AGGGGCGCa-----CGGCUCC---GGCa--C--UGGUG- -5'
28731 5' -63 NC_006146.1 + 157567 0.7 0.429022
Target:  5'- cCUCCGCGUagGCCGcGGCCGacuCCACc -3'
miRNA:   3'- aGGGGCGCA--CGGCuCCGGCacuGGUG- -5'
28731 5' -63 NC_006146.1 + 167646 0.69 0.445189
Target:  5'- gCCCggCGCGUGCCgGGGGCCcgggggcGUGucCCGCg -3'
miRNA:   3'- aGGG--GCGCACGG-CUCCGG-------CACu-GGUG- -5'
28731 5' -63 NC_006146.1 + 117908 0.69 0.446049
Target:  5'- cCCCCGCG-GCCacGGCCGgcagGuCCGCc -3'
miRNA:   3'- aGGGGCGCaCGGcuCCGGCa---CuGGUG- -5'
28731 5' -63 NC_006146.1 + 169448 0.69 0.454703
Target:  5'- --gCCGUGUGUgGAGGCCG-GGCCu- -3'
miRNA:   3'- aggGGCGCACGgCUCCGGCaCUGGug -5'
28731 5' -63 NC_006146.1 + 157497 0.68 0.49019
Target:  5'- gCCuuGCagaccugGCUGAGGCagucCGUGGCCGCg -3'
miRNA:   3'- aGGggCGca-----CGGCUCCG----GCACUGGUG- -5'
28731 5' -63 NC_006146.1 + 33090 0.69 0.463447
Target:  5'- gCCCUGCGgcuCUGGGGCagccggGUGGCCGCc -3'
miRNA:   3'- aGGGGCGCac-GGCUCCGg-----CACUGGUG- -5'
28731 5' -63 NC_006146.1 + 168516 0.69 0.454703
Target:  5'- --gCCGUGUGUgGAGGCCG-GGCCu- -3'
miRNA:   3'- aggGGCGCACGgCUCCGGCaCUGGug -5'
28731 5' -63 NC_006146.1 + 131062 0.73 0.258324
Target:  5'- cCCCCGCcggcccacugugcgGCCGAGGCCGccgGGCCGu -3'
miRNA:   3'- aGGGGCGca------------CGGCUCCGGCa--CUGGUg -5'
28731 5' -63 NC_006146.1 + 132745 0.69 0.463447
Target:  5'- gCCCCG-GUucuCCGGGGCCGgauGCCGCg -3'
miRNA:   3'- aGGGGCgCAc--GGCUCCGGCac-UGGUG- -5'
28731 5' -63 NC_006146.1 + 42106 0.72 0.307797
Target:  5'- cUCCCUGUGUgGCCGAucacgcuucGGCCcugcUGGCCACa -3'
miRNA:   3'- -AGGGGCGCA-CGGCU---------CCGGc---ACUGGUG- -5'
28731 5' -63 NC_006146.1 + 167584 0.69 0.454703
Target:  5'- --gCCGUGUGUgGAGGCCG-GGCCu- -3'
miRNA:   3'- aggGGCGCACGgCUCCGGCaCUGGug -5'
28731 5' -63 NC_006146.1 + 31830 0.69 0.472278
Target:  5'- cCCCCGCGccaCCaGGGCCcguaugGUGGCCGCc -3'
miRNA:   3'- aGGGGCGCac-GGcUCCGG------CACUGGUG- -5'
28731 5' -63 NC_006146.1 + 169510 0.68 0.49019
Target:  5'- gCCCggCGCGUGCCGggggacccgGGGgCGUGucCCGCg -3'
miRNA:   3'- aGGG--GCGCACGGC---------UCCgGCACu-GGUG- -5'
28731 5' -63 NC_006146.1 + 155138 0.7 0.403405
Target:  5'- gUCCCCGCGgcGUCGcagcagcGGGCCaG-GGCCACg -3'
miRNA:   3'- -AGGGGCGCa-CGGC-------UCCGG-CaCUGGUG- -5'
28731 5' -63 NC_006146.1 + 44720 0.7 0.429022
Target:  5'- cCCCCGCuGgccgGCCuGAuGCgGUGGCCGCg -3'
miRNA:   3'- aGGGGCG-Ca---CGG-CUcCGgCACUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.