miRNA display CGI


Results 21 - 40 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28731 5' -63 NC_006146.1 + 169055 0.66 0.612649
Target:  5'- cUCCCGUGUGCCuguggcacccGGCUGUGccccGCCAUg -3'
miRNA:   3'- aGGGGCGCACGGcu--------CCGGCAC----UGGUG- -5'
28731 5' -63 NC_006146.1 + 146814 0.66 0.612649
Target:  5'- -aCCCGCGUcccaGgCGAGGCCGc-GCCAg -3'
miRNA:   3'- agGGGCGCA----CgGCUCCGGCacUGGUg -5'
28731 5' -63 NC_006146.1 + 53525 0.66 0.602992
Target:  5'- gCCgCGCGUGUgaAGGCCGcgagGACCGa -3'
miRNA:   3'- aGGgGCGCACGgcUCCGGCa---CUGGUg -5'
28731 5' -63 NC_006146.1 + 130509 0.67 0.597207
Target:  5'- cCCCCGCGggaggcuacuacgcGCCG-GGCgGcGACCAg -3'
miRNA:   3'- aGGGGCGCa-------------CGGCuCCGgCaCUGGUg -5'
28731 5' -63 NC_006146.1 + 18384 0.67 0.593355
Target:  5'- gUCCUgGUG-GCCGGGGUgGUGAUCc- -3'
miRNA:   3'- -AGGGgCGCaCGGCUCCGgCACUGGug -5'
28731 5' -63 NC_006146.1 + 168267 0.67 0.593355
Target:  5'- gUCCCCGcCGUGUggaCGAaGCCGUGcuCCAg -3'
miRNA:   3'- -AGGGGC-GCACG---GCUcCGGCACu-GGUg -5'
28731 5' -63 NC_006146.1 + 115965 0.67 0.593355
Target:  5'- gCCCCGCGggcagacGUCGAGGCCuacuGCCGg -3'
miRNA:   3'- aGGGGCGCa------CGGCUCCGGcac-UGGUg -5'
28731 5' -63 NC_006146.1 + 71673 0.67 0.590468
Target:  5'- -gCCCgagacgguggucggGCGcGCCGAGGCCGcGGCCu- -3'
miRNA:   3'- agGGG--------------CGCaCGGCUCCGGCaCUGGug -5'
28731 5' -63 NC_006146.1 + 126173 0.67 0.583742
Target:  5'- -gCCCGCG-GCCaccgcaucAGGCCGgccagcgggGGCCACg -3'
miRNA:   3'- agGGGCGCaCGGc-------UCCGGCa--------CUGGUG- -5'
28731 5' -63 NC_006146.1 + 15929 0.67 0.583742
Target:  5'- gCCCUGCG---CGAGGCCGUgcuGACCGu -3'
miRNA:   3'- aGGGGCGCacgGCUCCGGCA---CUGGUg -5'
28731 5' -63 NC_006146.1 + 34068 0.67 0.583742
Target:  5'- gUCCCGUG-GCaCGGGGCCGgggGucccggggggcaGCCGCg -3'
miRNA:   3'- aGGGGCGCaCG-GCUCCGGCa--C------------UGGUG- -5'
28731 5' -63 NC_006146.1 + 122786 0.67 0.580865
Target:  5'- aCUCCaagagaagagacggGCG-GCCGAGGCCGcgcugucGGCCGCc -3'
miRNA:   3'- aGGGG--------------CGCaCGGCUCCGGCa------CUGGUG- -5'
28731 5' -63 NC_006146.1 + 109089 0.67 0.574161
Target:  5'- aCCCCGCccGUGCCGu-GCCGgcgcGcCCACu -3'
miRNA:   3'- aGGGGCG--CACGGCucCGGCa---CuGGUG- -5'
28731 5' -63 NC_006146.1 + 168325 0.67 0.574161
Target:  5'- cUCCCgaggGCGggGCCGGGGCCuGgcgggGGCCAg -3'
miRNA:   3'- -AGGGg---CGCa-CGGCUCCGG-Ca----CUGGUg -5'
28731 5' -63 NC_006146.1 + 169257 0.67 0.574161
Target:  5'- cUCCCgaggGCGggGCCGGGGCCuGgcgggGGCCAg -3'
miRNA:   3'- -AGGGg---CGCa-CGGCUCCGG-Ca----CUGGUg -5'
28731 5' -63 NC_006146.1 + 170188 0.67 0.574161
Target:  5'- cUCCCgaggGCGggGCCGGGGCCuGgcgggGGCCAg -3'
miRNA:   3'- -AGGGg---CGCa-CGGCUCCGG-Ca----CUGGUg -5'
28731 5' -63 NC_006146.1 + 167393 0.67 0.574161
Target:  5'- cUCCCgaggGCGggGCCGGGGCCuGgcgggGGCCAg -3'
miRNA:   3'- -AGGGg---CGCa-CGGCUCCGG-Ca----CUGGUg -5'
28731 5' -63 NC_006146.1 + 70112 0.67 0.574161
Target:  5'- -aCCCGUuUGCUaAGGCUGUG-CCACu -3'
miRNA:   3'- agGGGCGcACGGcUCCGGCACuGGUG- -5'
28731 5' -63 NC_006146.1 + 41826 0.67 0.573205
Target:  5'- gUCCCCuuucUGUGaaaacacCCG-GGCCGUGGCCAg -3'
miRNA:   3'- -AGGGGc---GCAC-------GGCuCCGGCACUGGUg -5'
28731 5' -63 NC_006146.1 + 105837 0.67 0.564617
Target:  5'- gCCCCGCGccGCCGAGuagacGCaGUG-CCGCu -3'
miRNA:   3'- aGGGGCGCa-CGGCUC-----CGgCACuGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.