Results 1 - 20 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28732 | 3' | -59.3 | NC_006146.1 | + | 58967 | 0.66 | 0.823282 |
Target: 5'- -uGCgGCCGGUAUaauGAUGGcCACCa -3' miRNA: 3'- gcCGaCGGCCGUGgcuCUACCaGUGG- -5' |
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28732 | 3' | -59.3 | NC_006146.1 | + | 144719 | 0.66 | 0.797931 |
Target: 5'- gCGGCUGCgGGggacgcuggcaCACCGGGccgccggGGUC-CCu -3' miRNA: 3'- -GCCGACGgCC-----------GUGGCUCua-----CCAGuGG- -5' |
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28732 | 3' | -59.3 | NC_006146.1 | + | 141642 | 0.66 | 0.797931 |
Target: 5'- gCGGCUGCgGGggacgcuggcaCACCGGGccgccggGGUC-CCu -3' miRNA: 3'- -GCCGACGgCC-----------GUGGCUCua-----CCAGuGG- -5' |
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28732 | 3' | -59.3 | NC_006146.1 | + | 72367 | 0.66 | 0.797063 |
Target: 5'- cCGGCUGgCGGCGacgaaacCCGAGucggGUGGg-GCCc -3' miRNA: 3'- -GCCGACgGCCGU-------GGCUC----UACCagUGG- -5' |
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28732 | 3' | -59.3 | NC_006146.1 | + | 115421 | 0.66 | 0.795324 |
Target: 5'- gCGGCcggGCCucguucucgcccgcGGcCAUCGAGcgGGUgGCCa -3' miRNA: 3'- -GCCGa--CGG--------------CC-GUGGCUCuaCCAgUGG- -5' |
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28732 | 3' | -59.3 | NC_006146.1 | + | 53029 | 0.66 | 0.791828 |
Target: 5'- gCGGCUggccgcgGCCGcCGCCGAGAgguaaggggggcgggUGGggaaCACCg -3' miRNA: 3'- -GCCGA-------CGGCcGUGGCUCU---------------ACCa---GUGG- -5' |
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28732 | 3' | -59.3 | NC_006146.1 | + | 42327 | 0.66 | 0.797931 |
Target: 5'- aGGUUGCUgacuGGC-CCGGGA-GGUCAgUg -3' miRNA: 3'- gCCGACGG----CCGuGGCUCUaCCAGUgG- -5' |
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28732 | 3' | -59.3 | NC_006146.1 | + | 85606 | 0.66 | 0.797931 |
Target: 5'- uCGGaaGCUGGCACCGGGGcaaaGG--GCCa -3' miRNA: 3'- -GCCgaCGGCCGUGGCUCUa---CCagUGG- -5' |
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28732 | 3' | -59.3 | NC_006146.1 | + | 126799 | 0.66 | 0.797931 |
Target: 5'- gGGCaGCCGGgGCCuGGA-GGUUuCCg -3' miRNA: 3'- gCCGaCGGCCgUGGcUCUaCCAGuGG- -5' |
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28732 | 3' | -59.3 | NC_006146.1 | + | 147797 | 0.66 | 0.797931 |
Target: 5'- gCGGCUGCgGGggacgcuggcaCACCGGGccgccggGGUC-CCu -3' miRNA: 3'- -GCCGACGgCC-----------GUGGCUCua-----CCAGuGG- -5' |
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28732 | 3' | -59.3 | NC_006146.1 | + | 150875 | 0.66 | 0.797931 |
Target: 5'- gCGGCUGCgGGggacgcuggcaCACCGGGccgccggGGUC-CCu -3' miRNA: 3'- -GCCGACGgCC-----------GUGGCUCua-----CCAGuGG- -5' |
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28732 | 3' | -59.3 | NC_006146.1 | + | 153953 | 0.66 | 0.797931 |
Target: 5'- gCGGCUGCgGGggacgcuggcaCACCGGGccgccggGGUC-CCu -3' miRNA: 3'- -GCCGACGgCC-----------GUGGCUCua-----CCAGuGG- -5' |
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28732 | 3' | -59.3 | NC_006146.1 | + | 114285 | 0.66 | 0.823282 |
Target: 5'- uGGCUGCCacuauGGaCGCCGGcGA-GGagACCg -3' miRNA: 3'- gCCGACGG-----CC-GUGGCU-CUaCCagUGG- -5' |
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28732 | 3' | -59.3 | NC_006146.1 | + | 43628 | 0.66 | 0.823282 |
Target: 5'- aGGgaGUgGGCGgCGGGGcgUGGcCGCCu -3' miRNA: 3'- gCCgaCGgCCGUgGCUCU--ACCaGUGG- -5' |
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28732 | 3' | -59.3 | NC_006146.1 | + | 126588 | 0.66 | 0.814145 |
Target: 5'- cCGGCUGCCacGGCcccagcccccacuACCGGuuuggcGGUGGUCGgUg -3' miRNA: 3'- -GCCGACGG--CCG-------------UGGCU------CUACCAGUgG- -5' |
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28732 | 3' | -59.3 | NC_006146.1 | + | 137690 | 0.66 | 0.806531 |
Target: 5'- cCGGCUGCCccggaGCACCaGGAgcacccGGagGCCa -3' miRNA: 3'- -GCCGACGGc----CGUGGcUCUa-----CCagUGG- -5' |
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28732 | 3' | -59.3 | NC_006146.1 | + | 59691 | 0.66 | 0.806531 |
Target: 5'- gCGGCaaUGCCGGUGCCGgAGGcggagguguuguUGGUguagGCCg -3' miRNA: 3'- -GCCG--ACGGCCGUGGC-UCU------------ACCAg---UGG- -5' |
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28732 | 3' | -59.3 | NC_006146.1 | + | 10533 | 0.66 | 0.806531 |
Target: 5'- gCGGcCUGCCaagGGCGCUGAGA----CGCCa -3' miRNA: 3'- -GCC-GACGG---CCGUGGCUCUaccaGUGG- -5' |
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28732 | 3' | -59.3 | NC_006146.1 | + | 33019 | 0.66 | 0.805677 |
Target: 5'- aCGGggaccccCUGCCGGC-CCGGGgcGGg-GCCc -3' miRNA: 3'- -GCC-------GACGGCCGuGGCUCuaCCagUGG- -5' |
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28732 | 3' | -59.3 | NC_006146.1 | + | 157031 | 0.66 | 0.797931 |
Target: 5'- gCGGCUGCgGGggacgcuggcaCACCGGGccgccggGGUC-CCu -3' miRNA: 3'- -GCCGACGgCC-----------GUGGCUCua-----CCAGuGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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