Results 1 - 20 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28732 | 3' | -59.3 | NC_006146.1 | + | 166373 | 1.1 | 0.001452 |
Target: 5'- gCGGCUGCCGGCACCGAGAUGGUCACCc -3' miRNA: 3'- -GCCGACGGCCGUGGCUCUACCAGUGG- -5' |
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28732 | 3' | -59.3 | NC_006146.1 | + | 54000 | 0.78 | 0.211763 |
Target: 5'- cCGGCUuucccucaggGCCGGCACC-AGGUGG-CGCCu -3' miRNA: 3'- -GCCGA----------CGGCCGUGGcUCUACCaGUGG- -5' |
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28732 | 3' | -59.3 | NC_006146.1 | + | 57928 | 0.76 | 0.292151 |
Target: 5'- gGGCgcugGCCGGCGCCGccAUGGugcugcaUCACCa -3' miRNA: 3'- gCCGa---CGGCCGUGGCucUACC-------AGUGG- -5' |
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28732 | 3' | -59.3 | NC_006146.1 | + | 128189 | 0.76 | 0.29944 |
Target: 5'- gCGGCUGCCaGC-CCGAGcgGG-CGCUg -3' miRNA: 3'- -GCCGACGGcCGuGGCUCuaCCaGUGG- -5' |
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28732 | 3' | -59.3 | NC_006146.1 | + | 44069 | 0.76 | 0.305508 |
Target: 5'- gGGCgccugcaUGCCGGgACUGGGGUGGUucCACCu -3' miRNA: 3'- gCCG-------ACGGCCgUGGCUCUACCA--GUGG- -5' |
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28732 | 3' | -59.3 | NC_006146.1 | + | 170091 | 0.75 | 0.334337 |
Target: 5'- cCGGCgggagggGCCGGCGCCGcAGggGGg-GCCg -3' miRNA: 3'- -GCCGa------CGGCCGUGGC-UCuaCCagUGG- -5' |
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28732 | 3' | -59.3 | NC_006146.1 | + | 117874 | 0.75 | 0.334337 |
Target: 5'- gCGGCUGagaugGGCAcCCGAGGcUGGUCAUCg -3' miRNA: 3'- -GCCGACgg---CCGU-GGCUCU-ACCAGUGG- -5' |
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28732 | 3' | -59.3 | NC_006146.1 | + | 152270 | 0.74 | 0.362022 |
Target: 5'- uGGCUGCCuggagugcucugcuGGcCACCGaAGGuuUGGUCGCCc -3' miRNA: 3'- gCCGACGG--------------CC-GUGGC-UCU--ACCAGUGG- -5' |
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28732 | 3' | -59.3 | NC_006146.1 | + | 61226 | 0.73 | 0.412706 |
Target: 5'- uCGGgUaCCGGaCugCGAGGUGGUCugCu -3' miRNA: 3'- -GCCgAcGGCC-GugGCUCUACCAGugG- -5' |
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28732 | 3' | -59.3 | NC_006146.1 | + | 53617 | 0.72 | 0.464846 |
Target: 5'- gCGGCaccggGCCGuGCACCGAcuGAUGGUggggaACCu -3' miRNA: 3'- -GCCGa----CGGC-CGUGGCU--CUACCAg----UGG- -5' |
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28732 | 3' | -59.3 | NC_006146.1 | + | 151333 | 0.72 | 0.464846 |
Target: 5'- -cGC-GCCGG-ACCGAGA-GGUCGCCc -3' miRNA: 3'- gcCGaCGGCCgUGGCUCUaCCAGUGG- -5' |
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28732 | 3' | -59.3 | NC_006146.1 | + | 112405 | 0.72 | 0.464846 |
Target: 5'- gGGCUGCCGuGC-CUGuGGAU-GUCACCa -3' miRNA: 3'- gCCGACGGC-CGuGGC-UCUAcCAGUGG- -5' |
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28732 | 3' | -59.3 | NC_006146.1 | + | 154662 | 0.72 | 0.465744 |
Target: 5'- cCGGCUGCaccgugguggcggggGGCGCUGcugcuGGGUGGUCugCg -3' miRNA: 3'- -GCCGACGg--------------CCGUGGC-----UCUACCAGugG- -5' |
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28732 | 3' | -59.3 | NC_006146.1 | + | 12836 | 0.72 | 0.482978 |
Target: 5'- cCGGCgGCCGGaC-CCGAGGaGG-CGCCu -3' miRNA: 3'- -GCCGaCGGCC-GuGGCUCUaCCaGUGG- -5' |
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28732 | 3' | -59.3 | NC_006146.1 | + | 15915 | 0.72 | 0.482978 |
Target: 5'- cCGGCgGCCGGaC-CCGAGGaGG-CGCCu -3' miRNA: 3'- -GCCGaCGGCC-GuGGCUCUaCCaGUGG- -5' |
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28732 | 3' | -59.3 | NC_006146.1 | + | 25148 | 0.72 | 0.482978 |
Target: 5'- cCGGCgGCCGGaC-CCGAGGaGG-CGCCu -3' miRNA: 3'- -GCCGaCGGCC-GuGGCUCUaCCaGUGG- -5' |
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28732 | 3' | -59.3 | NC_006146.1 | + | 22070 | 0.72 | 0.482978 |
Target: 5'- cCGGCgGCCGGaC-CCGAGGaGG-CGCCu -3' miRNA: 3'- -GCCGaCGGCC-GuGGCUCUaCCaGUGG- -5' |
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28732 | 3' | -59.3 | NC_006146.1 | + | 28226 | 0.72 | 0.482978 |
Target: 5'- cCGGCgGCCGGaC-CCGAGGaGG-CGCCu -3' miRNA: 3'- -GCCGaCGGCC-GuGGCUCUaCCaGUGG- -5' |
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28732 | 3' | -59.3 | NC_006146.1 | + | 18992 | 0.72 | 0.482978 |
Target: 5'- cCGGCgGCCGGaC-CCGAGGaGG-CGCCu -3' miRNA: 3'- -GCCGaCGGCC-GuGGCUCUaCCaGUGG- -5' |
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28732 | 3' | -59.3 | NC_006146.1 | + | 52672 | 0.72 | 0.501443 |
Target: 5'- aCGuGCgcaGCCGcCucuCCGAGAUGGUCGCUg -3' miRNA: 3'- -GC-CGa--CGGCcGu--GGCUCUACCAGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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