miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28732 3' -59.3 NC_006146.1 + 2477 0.66 0.818322
Target:  5'- gCGGUgugGCCGGCgggggcaggcagcugGCCGAcgagcuGAUGauaguGUCGCCg -3'
miRNA:   3'- -GCCGa--CGGCCG---------------UGGCU------CUAC-----CAGUGG- -5'
28732 3' -59.3 NC_006146.1 + 10533 0.66 0.806531
Target:  5'- gCGGcCUGCCaagGGCGCUGAGA----CGCCa -3'
miRNA:   3'- -GCC-GACGG---CCGUGGCUCUaccaGUGG- -5'
28732 3' -59.3 NC_006146.1 + 12413 0.69 0.627146
Target:  5'- gCGGC-GgUGGaCGCCGAGGUGGUC-Ca -3'
miRNA:   3'- -GCCGaCgGCC-GUGGCUCUACCAGuGg -5'
28732 3' -59.3 NC_006146.1 + 12836 0.72 0.482978
Target:  5'- cCGGCgGCCGGaC-CCGAGGaGG-CGCCu -3'
miRNA:   3'- -GCCGaCGGCC-GuGGCUCUaCCaGUGG- -5'
28732 3' -59.3 NC_006146.1 + 15915 0.72 0.482978
Target:  5'- cCGGCgGCCGGaC-CCGAGGaGG-CGCCu -3'
miRNA:   3'- -GCCGaCGGCC-GuGGCUCUaCCaGUGG- -5'
28732 3' -59.3 NC_006146.1 + 18992 0.72 0.482978
Target:  5'- cCGGCgGCCGGaC-CCGAGGaGG-CGCCu -3'
miRNA:   3'- -GCCGaCGGCC-GuGGCUCUaCCaGUGG- -5'
28732 3' -59.3 NC_006146.1 + 21356 0.71 0.548859
Target:  5'- gGGCUGCCGGCGggcuuCCu-GccGGUCAUCg -3'
miRNA:   3'- gCCGACGGCCGU-----GGcuCuaCCAGUGG- -5'
28732 3' -59.3 NC_006146.1 + 22070 0.72 0.482978
Target:  5'- cCGGCgGCCGGaC-CCGAGGaGG-CGCCu -3'
miRNA:   3'- -GCCGaCGGCC-GuGGCUCUaCCaGUGG- -5'
28732 3' -59.3 NC_006146.1 + 24116 0.69 0.627146
Target:  5'- gGGCgGCUGGCACCGGGccuguaccuGUCGCg -3'
miRNA:   3'- gCCGaCGGCCGUGGCUCuac------CAGUGg -5'
28732 3' -59.3 NC_006146.1 + 25148 0.72 0.482978
Target:  5'- cCGGCgGCCGGaC-CCGAGGaGG-CGCCu -3'
miRNA:   3'- -GCCGaCGGCC-GuGGCUCUaCCaGUGG- -5'
28732 3' -59.3 NC_006146.1 + 28226 0.72 0.482978
Target:  5'- cCGGCgGCCGGaC-CCGAGGaGG-CGCCu -3'
miRNA:   3'- -GCCGaCGGCC-GuGGCUCUaCCaGUGG- -5'
28732 3' -59.3 NC_006146.1 + 33019 0.66 0.805677
Target:  5'- aCGGggaccccCUGCCGGC-CCGGGgcGGg-GCCc -3'
miRNA:   3'- -GCC-------GACGGCCGuGGCUCuaCCagUGG- -5'
28732 3' -59.3 NC_006146.1 + 33104 0.68 0.724788
Target:  5'- gGGCaGCCGGguggcCGCCG-GcgGGUuCGCCg -3'
miRNA:   3'- gCCGaCGGCC-----GUGGCuCuaCCA-GUGG- -5'
28732 3' -59.3 NC_006146.1 + 33228 0.68 0.724788
Target:  5'- gGGCaGCCGGguggcCGCCG-GcgGGUcCGCCg -3'
miRNA:   3'- gCCGaCGGCC-----GUGGCuCuaCCA-GUGG- -5'
28732 3' -59.3 NC_006146.1 + 33338 0.69 0.666579
Target:  5'- cCGGgUGCUccggGGCAgCCG-GGUGGcCGCCg -3'
miRNA:   3'- -GCCgACGG----CCGU-GGCuCUACCaGUGG- -5'
28732 3' -59.3 NC_006146.1 + 33546 0.67 0.734277
Target:  5'- cCGGCuUGCCuGGCcCUGGugcuccuccGggGGUCGCCg -3'
miRNA:   3'- -GCCG-ACGG-CCGuGGCU---------CuaCCAGUGG- -5'
28732 3' -59.3 NC_006146.1 + 41515 0.69 0.666579
Target:  5'- aGGCUuCCGGCcCCaGAGGaGGcCGCCg -3'
miRNA:   3'- gCCGAcGGCCGuGG-CUCUaCCaGUGG- -5'
28732 3' -59.3 NC_006146.1 + 42327 0.66 0.797931
Target:  5'- aGGUUGCUgacuGGC-CCGGGA-GGUCAgUg -3'
miRNA:   3'- gCCGACGG----CCGuGGCUCUaCCAGUgG- -5'
28732 3' -59.3 NC_006146.1 + 43525 0.71 0.5297
Target:  5'- aGGCUGCCGGcCACCaucAGuggGGUguCCg -3'
miRNA:   3'- gCCGACGGCC-GUGGc--UCua-CCAguGG- -5'
28732 3' -59.3 NC_006146.1 + 43628 0.66 0.823282
Target:  5'- aGGgaGUgGGCGgCGGGGcgUGGcCGCCu -3'
miRNA:   3'- gCCgaCGgCCGUgGCUCU--ACCaGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.