miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28732 3' -59.3 NC_006146.1 + 54000 0.78 0.211763
Target:  5'- cCGGCUuucccucaggGCCGGCACC-AGGUGG-CGCCu -3'
miRNA:   3'- -GCCGA----------CGGCCGUGGcUCUACCaGUGG- -5'
28732 3' -59.3 NC_006146.1 + 56584 0.7 0.577979
Target:  5'- gGGCgGCCgGGCGCCGAGcccGcCGCCg -3'
miRNA:   3'- gCCGaCGG-CCGUGGCUCuacCaGUGG- -5'
28732 3' -59.3 NC_006146.1 + 44198 0.69 0.617279
Target:  5'- gCGGCUGCaCuGCAgCCGGGGgcggugccuUGGUgACCg -3'
miRNA:   3'- -GCCGACG-GcCGU-GGCUCU---------ACCAgUGG- -5'
28732 3' -59.3 NC_006146.1 + 123352 0.66 0.831418
Target:  5'- aCGGUUGuaGGCcgcgaggaggACCGAGgcGG-CGCCc -3'
miRNA:   3'- -GCCGACggCCG----------UGGCUCuaCCaGUGG- -5'
28732 3' -59.3 NC_006146.1 + 152270 0.74 0.362022
Target:  5'- uGGCUGCCuggagugcucugcuGGcCACCGaAGGuuUGGUCGCCc -3'
miRNA:   3'- gCCGACGG--------------CC-GUGGC-UCU--ACCAGUGG- -5'
28732 3' -59.3 NC_006146.1 + 112405 0.72 0.464846
Target:  5'- gGGCUGCCGuGC-CUGuGGAU-GUCACCa -3'
miRNA:   3'- gCCGACGGC-CGuGGC-UCUAcCAGUGG- -5'
28732 3' -59.3 NC_006146.1 + 154662 0.72 0.465744
Target:  5'- cCGGCUGCaccgugguggcggggGGCGCUGcugcuGGGUGGUCugCg -3'
miRNA:   3'- -GCCGACGg--------------CCGUGGC-----UCUACCAGugG- -5'
28732 3' -59.3 NC_006146.1 + 12836 0.72 0.482978
Target:  5'- cCGGCgGCCGGaC-CCGAGGaGG-CGCCu -3'
miRNA:   3'- -GCCGaCGGCC-GuGGCUCUaCCaGUGG- -5'
28732 3' -59.3 NC_006146.1 + 22070 0.72 0.482978
Target:  5'- cCGGCgGCCGGaC-CCGAGGaGG-CGCCu -3'
miRNA:   3'- -GCCGaCGGCC-GuGGCUCUaCCaGUGG- -5'
28732 3' -59.3 NC_006146.1 + 148536 0.7 0.577002
Target:  5'- -uGCUGCUGGcCACUGccaugauGGGUGGUgGCCg -3'
miRNA:   3'- gcCGACGGCC-GUGGC-------UCUACCAgUGG- -5'
28732 3' -59.3 NC_006146.1 + 28226 0.72 0.482978
Target:  5'- cCGGCgGCCGGaC-CCGAGGaGG-CGCCu -3'
miRNA:   3'- -GCCGaCGGCC-GuGGCUCUaCCaGUGG- -5'
28732 3' -59.3 NC_006146.1 + 18992 0.72 0.482978
Target:  5'- cCGGCgGCCGGaC-CCGAGGaGG-CGCCu -3'
miRNA:   3'- -GCCGaCGGCC-GuGGCUCUaCCaGUGG- -5'
28732 3' -59.3 NC_006146.1 + 44069 0.76 0.305508
Target:  5'- gGGCgccugcaUGCCGGgACUGGGGUGGUucCACCu -3'
miRNA:   3'- gCCG-------ACGGCCgUGGCUCUACCA--GUGG- -5'
28732 3' -59.3 NC_006146.1 + 114158 0.71 0.510792
Target:  5'- aGGCgcaUGCUGGCcCUGGGcagcagGGUCACCa -3'
miRNA:   3'- gCCG---ACGGCCGuGGCUCua----CCAGUGG- -5'
28732 3' -59.3 NC_006146.1 + 117874 0.75 0.334337
Target:  5'- gCGGCUGagaugGGCAcCCGAGGcUGGUCAUCg -3'
miRNA:   3'- -GCCGACgg---CCGU-GGCUCU-ACCAGUGG- -5'
28732 3' -59.3 NC_006146.1 + 15915 0.72 0.482978
Target:  5'- cCGGCgGCCGGaC-CCGAGGaGG-CGCCu -3'
miRNA:   3'- -GCCGaCGGCC-GuGGCUCUaCCaGUGG- -5'
28732 3' -59.3 NC_006146.1 + 147557 0.7 0.568229
Target:  5'- -cGC-GCCaGGCGCUGAGGUcGGUCugCa -3'
miRNA:   3'- gcCGaCGG-CCGUGGCUCUA-CCAGugG- -5'
28732 3' -59.3 NC_006146.1 + 92442 0.7 0.577979
Target:  5'- uGGagaCUGUagCGGCGCCGGGAUGGcCAUg -3'
miRNA:   3'- gCC---GACG--GCCGUGGCUCUACCaGUGg -5'
28732 3' -59.3 NC_006146.1 + 170091 0.75 0.334337
Target:  5'- cCGGCgggagggGCCGGCGCCGcAGggGGg-GCCg -3'
miRNA:   3'- -GCCGa------CGGCCGUGGC-UCuaCCagUGG- -5'
28732 3' -59.3 NC_006146.1 + 151333 0.72 0.464846
Target:  5'- -cGC-GCCGG-ACCGAGA-GGUCGCCc -3'
miRNA:   3'- gcCGaCGGCCgUGGCUCUaCCAGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.