miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28732 3' -59.3 NC_006146.1 + 157031 0.66 0.797931
Target:  5'- gCGGCUGCgGGggacgcuggcaCACCGGGccgccggGGUC-CCu -3'
miRNA:   3'- -GCCGACGgCC-----------GUGGCUCua-----CCAGuGG- -5'
28732 3' -59.3 NC_006146.1 + 126799 0.66 0.797931
Target:  5'- gGGCaGCCGGgGCCuGGA-GGUUuCCg -3'
miRNA:   3'- gCCGaCGGCCgUGGcUCUaCCAGuGG- -5'
28732 3' -59.3 NC_006146.1 + 153953 0.66 0.797931
Target:  5'- gCGGCUGCgGGggacgcuggcaCACCGGGccgccggGGUC-CCu -3'
miRNA:   3'- -GCCGACGgCC-----------GUGGCUCua-----CCAGuGG- -5'
28732 3' -59.3 NC_006146.1 + 150875 0.66 0.797931
Target:  5'- gCGGCUGCgGGggacgcuggcaCACCGGGccgccggGGUC-CCu -3'
miRNA:   3'- -GCCGACGgCC-----------GUGGCUCua-----CCAGuGG- -5'
28732 3' -59.3 NC_006146.1 + 168332 0.66 0.797931
Target:  5'- gGGCgggGCCGGgGCCuGGcgGGg-GCCa -3'
miRNA:   3'- gCCGa--CGGCCgUGGcUCuaCCagUGG- -5'
28732 3' -59.3 NC_006146.1 + 167400 0.66 0.797931
Target:  5'- gGGCgggGCCGGgGCCuGGcgGGg-GCCa -3'
miRNA:   3'- gCCGa--CGGCCgUGGcUCuaCCagUGG- -5'
28732 3' -59.3 NC_006146.1 + 147797 0.66 0.797931
Target:  5'- gCGGCUGCgGGggacgcuggcaCACCGGGccgccggGGUC-CCu -3'
miRNA:   3'- -GCCGACGgCC-----------GUGGCUCua-----CCAGuGG- -5'
28732 3' -59.3 NC_006146.1 + 42327 0.66 0.797931
Target:  5'- aGGUUGCUgacuGGC-CCGGGA-GGUCAgUg -3'
miRNA:   3'- gCCGACGG----CCGuGGCUCUaCCAGUgG- -5'
28732 3' -59.3 NC_006146.1 + 144719 0.66 0.797931
Target:  5'- gCGGCUGCgGGggacgcuggcaCACCGGGccgccggGGUC-CCu -3'
miRNA:   3'- -GCCGACGgCC-----------GUGGCUCua-----CCAGuGG- -5'
28732 3' -59.3 NC_006146.1 + 169264 0.66 0.797931
Target:  5'- gGGCgggGCCGGgGCCuGGcgGGg-GCCa -3'
miRNA:   3'- gCCGa--CGGCCgUGGcUCuaCCagUGG- -5'
28732 3' -59.3 NC_006146.1 + 72367 0.66 0.797063
Target:  5'- cCGGCUGgCGGCGacgaaacCCGAGucggGUGGg-GCCc -3'
miRNA:   3'- -GCCGACgGCCGU-------GGCUC----UACCagUGG- -5'
28732 3' -59.3 NC_006146.1 + 115421 0.66 0.795324
Target:  5'- gCGGCcggGCCucguucucgcccgcGGcCAUCGAGcgGGUgGCCa -3'
miRNA:   3'- -GCCGa--CGG--------------CC-GUGGCUCuaCCAgUGG- -5'
28732 3' -59.3 NC_006146.1 + 53029 0.66 0.791828
Target:  5'- gCGGCUggccgcgGCCGcCGCCGAGAgguaaggggggcgggUGGggaaCACCg -3'
miRNA:   3'- -GCCGA-------CGGCcGUGGCUCU---------------ACCa---GUGG- -5'
28732 3' -59.3 NC_006146.1 + 128821 0.67 0.780321
Target:  5'- gGGC-GgCGGCA--GAGggGGUCACCc -3'
miRNA:   3'- gCCGaCgGCCGUggCUCuaCCAGUGG- -5'
28732 3' -59.3 NC_006146.1 + 54714 0.67 0.780321
Target:  5'- aCGGCggGCCcgggucagGGCgGCCGAGGggagacucaGGUCGCUg -3'
miRNA:   3'- -GCCGa-CGG--------CCG-UGGCUCUa--------CCAGUGG- -5'
28732 3' -59.3 NC_006146.1 + 93282 0.67 0.771327
Target:  5'- gGGUUGCCcuCGCCGG--UGGUCAUCu -3'
miRNA:   3'- gCCGACGGccGUGGCUcuACCAGUGG- -5'
28732 3' -59.3 NC_006146.1 + 141383 0.67 0.771327
Target:  5'- uGGUaaGCCaGGC-CCGAG--GGUCACCu -3'
miRNA:   3'- gCCGa-CGG-CCGuGGCUCuaCCAGUGG- -5'
28732 3' -59.3 NC_006146.1 + 147539 0.67 0.771327
Target:  5'- uGGUaaGCCaGGC-CCGAG--GGUCACCu -3'
miRNA:   3'- gCCGa-CGG-CCGuGGCUCuaCCAGUGG- -5'
28732 3' -59.3 NC_006146.1 + 144461 0.67 0.771327
Target:  5'- uGGUaaGCCaGGC-CCGAG--GGUCACCu -3'
miRNA:   3'- gCCGa-CGG-CCGuGGCUCuaCCAGUGG- -5'
28732 3' -59.3 NC_006146.1 + 150617 0.67 0.771327
Target:  5'- uGGUaaGCCaGGC-CCGAG--GGUCACCu -3'
miRNA:   3'- gCCGa-CGG-CCGuGGCUCuaCCAGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.