miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28732 5' -52 NC_006146.1 + 105858 0.66 0.989763
Target:  5'- gCAGUGCCG-CUCCucGCAgugggcccugGGAC-CGUAg -3'
miRNA:   3'- gGUCACGGUaGAGG--UGU----------UCUGuGCAU- -5'
28732 5' -52 NC_006146.1 + 3325 0.66 0.989493
Target:  5'- cCCGGccuccacacacgGCC-UCUCCGCGGGccuccACACGUGg -3'
miRNA:   3'- -GGUCa-----------CGGuAGAGGUGUUC-----UGUGCAU- -5'
28732 5' -52 NC_006146.1 + 2393 0.66 0.989493
Target:  5'- cCCGGccuccacacacgGCC-UCUCCGCGGGccuccACACGUGg -3'
miRNA:   3'- -GGUCa-----------CGGuAGAGGUGUUC-----UGUGCAU- -5'
28732 5' -52 NC_006146.1 + 1461 0.66 0.989493
Target:  5'- cCCGGccuccacacacgGCC-UCUCCGCGGGccuccACACGUGg -3'
miRNA:   3'- -GGUCa-----------CGGuAGAGGUGUUC-----UGUGCAU- -5'
28732 5' -52 NC_006146.1 + 530 0.66 0.989493
Target:  5'- cCCGGccuccacacacgGCC-UCUCCGCGGGccuccACACGUGg -3'
miRNA:   3'- -GGUCa-----------CGGuAGAGGUGUUC-----UGUGCAU- -5'
28732 5' -52 NC_006146.1 + 22960 0.66 0.988357
Target:  5'- gCCGGcUGCUAUCUCCu---GGCGgGUAu -3'
miRNA:   3'- -GGUC-ACGGUAGAGGuguuCUGUgCAU- -5'
28732 5' -52 NC_006146.1 + 86073 0.66 0.988357
Target:  5'- gCCGGUGCUGUCggagCCACugccACAUGUu -3'
miRNA:   3'- -GGUCACGGUAGa---GGUGuuc-UGUGCAu -5'
28732 5' -52 NC_006146.1 + 110819 0.66 0.988357
Target:  5'- cCCGGcgauUGCCcguagCUCCACGGGACgagGCGg- -3'
miRNA:   3'- -GGUC----ACGGua---GAGGUGUUCUG---UGCau -5'
28732 5' -52 NC_006146.1 + 123580 0.66 0.988357
Target:  5'- cCCGGcuggagGCCAUCaUCCAgGAGGCcCGg- -3'
miRNA:   3'- -GGUCa-----CGGUAG-AGGUgUUCUGuGCau -5'
28732 5' -52 NC_006146.1 + 70068 0.66 0.986805
Target:  5'- aUCAGUGCCAccUCcCCACAG---GCGUAg -3'
miRNA:   3'- -GGUCACGGU--AGaGGUGUUcugUGCAU- -5'
28732 5' -52 NC_006146.1 + 131389 0.66 0.985098
Target:  5'- cCCGGUGCUuUCUCCcCGuguccuccucAGACAUGa- -3'
miRNA:   3'- -GGUCACGGuAGAGGuGU----------UCUGUGCau -5'
28732 5' -52 NC_006146.1 + 6878 0.66 0.984919
Target:  5'- cCCGGUGCUAUUuuuggCCaACAAGGCcgccgugACGUAg -3'
miRNA:   3'- -GGUCACGGUAGa----GG-UGUUCUG-------UGCAU- -5'
28732 5' -52 NC_006146.1 + 102533 0.66 0.983229
Target:  5'- aCCAGcaccGCCAcggggaUCUCCAC-AGAgGCGUc -3'
miRNA:   3'- -GGUCa---CGGU------AGAGGUGuUCUgUGCAu -5'
28732 5' -52 NC_006146.1 + 71363 0.67 0.980973
Target:  5'- gCCAGUgggaaccGUCGUCUCCugAcuGCugGUGg -3'
miRNA:   3'- -GGUCA-------CGGUAGAGGugUucUGugCAU- -5'
28732 5' -52 NC_006146.1 + 129533 0.67 0.971134
Target:  5'- gCCGGaUGCCcca-CCAgAGGACACGUGu -3'
miRNA:   3'- -GGUC-ACGGuagaGGUgUUCUGUGCAU- -5'
28732 5' -52 NC_006146.1 + 98100 0.68 0.96811
Target:  5'- uCCAGUGCCAaaccgucCUCCAgacacUGAGACGCa-- -3'
miRNA:   3'- -GGUCACGGUa------GAGGU-----GUUCUGUGcau -5'
28732 5' -52 NC_006146.1 + 84385 0.68 0.964868
Target:  5'- aCCGGgcgGCCAUCauggccUCCGguAGGCAgGUGg -3'
miRNA:   3'- -GGUCa--CGGUAG------AGGUguUCUGUgCAU- -5'
28732 5' -52 NC_006146.1 + 78868 0.68 0.957705
Target:  5'- uCCGGUGCag-CUCCGCAuaaauguuccucAGGCugGg- -3'
miRNA:   3'- -GGUCACGguaGAGGUGU------------UCUGugCau -5'
28732 5' -52 NC_006146.1 + 85304 0.69 0.93562
Target:  5'- cCCGGUGCCAgCUUC-CGAGGCggGCGg- -3'
miRNA:   3'- -GGUCACGGUaGAGGuGUUCUG--UGCau -5'
28732 5' -52 NC_006146.1 + 68050 0.69 0.930462
Target:  5'- cUCAGUGUgAgcagCUCCACGAGcgGCGCGa- -3'
miRNA:   3'- -GGUCACGgUa---GAGGUGUUC--UGUGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.