Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28732 | 5' | -52 | NC_006146.1 | + | 105858 | 0.66 | 0.989763 |
Target: 5'- gCAGUGCCG-CUCCucGCAgugggcccugGGAC-CGUAg -3' miRNA: 3'- gGUCACGGUaGAGG--UGU----------UCUGuGCAU- -5' |
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28732 | 5' | -52 | NC_006146.1 | + | 3325 | 0.66 | 0.989493 |
Target: 5'- cCCGGccuccacacacgGCC-UCUCCGCGGGccuccACACGUGg -3' miRNA: 3'- -GGUCa-----------CGGuAGAGGUGUUC-----UGUGCAU- -5' |
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28732 | 5' | -52 | NC_006146.1 | + | 2393 | 0.66 | 0.989493 |
Target: 5'- cCCGGccuccacacacgGCC-UCUCCGCGGGccuccACACGUGg -3' miRNA: 3'- -GGUCa-----------CGGuAGAGGUGUUC-----UGUGCAU- -5' |
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28732 | 5' | -52 | NC_006146.1 | + | 1461 | 0.66 | 0.989493 |
Target: 5'- cCCGGccuccacacacgGCC-UCUCCGCGGGccuccACACGUGg -3' miRNA: 3'- -GGUCa-----------CGGuAGAGGUGUUC-----UGUGCAU- -5' |
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28732 | 5' | -52 | NC_006146.1 | + | 530 | 0.66 | 0.989493 |
Target: 5'- cCCGGccuccacacacgGCC-UCUCCGCGGGccuccACACGUGg -3' miRNA: 3'- -GGUCa-----------CGGuAGAGGUGUUC-----UGUGCAU- -5' |
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28732 | 5' | -52 | NC_006146.1 | + | 22960 | 0.66 | 0.988357 |
Target: 5'- gCCGGcUGCUAUCUCCu---GGCGgGUAu -3' miRNA: 3'- -GGUC-ACGGUAGAGGuguuCUGUgCAU- -5' |
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28732 | 5' | -52 | NC_006146.1 | + | 86073 | 0.66 | 0.988357 |
Target: 5'- gCCGGUGCUGUCggagCCACugccACAUGUu -3' miRNA: 3'- -GGUCACGGUAGa---GGUGuuc-UGUGCAu -5' |
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28732 | 5' | -52 | NC_006146.1 | + | 110819 | 0.66 | 0.988357 |
Target: 5'- cCCGGcgauUGCCcguagCUCCACGGGACgagGCGg- -3' miRNA: 3'- -GGUC----ACGGua---GAGGUGUUCUG---UGCau -5' |
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28732 | 5' | -52 | NC_006146.1 | + | 123580 | 0.66 | 0.988357 |
Target: 5'- cCCGGcuggagGCCAUCaUCCAgGAGGCcCGg- -3' miRNA: 3'- -GGUCa-----CGGUAG-AGGUgUUCUGuGCau -5' |
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28732 | 5' | -52 | NC_006146.1 | + | 70068 | 0.66 | 0.986805 |
Target: 5'- aUCAGUGCCAccUCcCCACAG---GCGUAg -3' miRNA: 3'- -GGUCACGGU--AGaGGUGUUcugUGCAU- -5' |
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28732 | 5' | -52 | NC_006146.1 | + | 131389 | 0.66 | 0.985098 |
Target: 5'- cCCGGUGCUuUCUCCcCGuguccuccucAGACAUGa- -3' miRNA: 3'- -GGUCACGGuAGAGGuGU----------UCUGUGCau -5' |
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28732 | 5' | -52 | NC_006146.1 | + | 6878 | 0.66 | 0.984919 |
Target: 5'- cCCGGUGCUAUUuuuggCCaACAAGGCcgccgugACGUAg -3' miRNA: 3'- -GGUCACGGUAGa----GG-UGUUCUG-------UGCAU- -5' |
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28732 | 5' | -52 | NC_006146.1 | + | 102533 | 0.66 | 0.983229 |
Target: 5'- aCCAGcaccGCCAcggggaUCUCCAC-AGAgGCGUc -3' miRNA: 3'- -GGUCa---CGGU------AGAGGUGuUCUgUGCAu -5' |
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28732 | 5' | -52 | NC_006146.1 | + | 71363 | 0.67 | 0.980973 |
Target: 5'- gCCAGUgggaaccGUCGUCUCCugAcuGCugGUGg -3' miRNA: 3'- -GGUCA-------CGGUAGAGGugUucUGugCAU- -5' |
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28732 | 5' | -52 | NC_006146.1 | + | 129533 | 0.67 | 0.971134 |
Target: 5'- gCCGGaUGCCcca-CCAgAGGACACGUGu -3' miRNA: 3'- -GGUC-ACGGuagaGGUgUUCUGUGCAU- -5' |
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28732 | 5' | -52 | NC_006146.1 | + | 98100 | 0.68 | 0.96811 |
Target: 5'- uCCAGUGCCAaaccgucCUCCAgacacUGAGACGCa-- -3' miRNA: 3'- -GGUCACGGUa------GAGGU-----GUUCUGUGcau -5' |
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28732 | 5' | -52 | NC_006146.1 | + | 84385 | 0.68 | 0.964868 |
Target: 5'- aCCGGgcgGCCAUCauggccUCCGguAGGCAgGUGg -3' miRNA: 3'- -GGUCa--CGGUAG------AGGUguUCUGUgCAU- -5' |
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28732 | 5' | -52 | NC_006146.1 | + | 78868 | 0.68 | 0.957705 |
Target: 5'- uCCGGUGCag-CUCCGCAuaaauguuccucAGGCugGg- -3' miRNA: 3'- -GGUCACGguaGAGGUGU------------UCUGugCau -5' |
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28732 | 5' | -52 | NC_006146.1 | + | 85304 | 0.69 | 0.93562 |
Target: 5'- cCCGGUGCCAgCUUC-CGAGGCggGCGg- -3' miRNA: 3'- -GGUCACGGUaGAGGuGUUCUG--UGCau -5' |
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28732 | 5' | -52 | NC_006146.1 | + | 68050 | 0.69 | 0.930462 |
Target: 5'- cUCAGUGUgAgcagCUCCACGAGcgGCGCGa- -3' miRNA: 3'- -GGUCACGgUa---GAGGUGUUC--UGUGCau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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