miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28733 3' -55.4 NC_006146.1 + 166151 1.1 0.002482
Target:  5'- gUGGACCAGGUGCUCAGUAGCAGACUCa -3'
miRNA:   3'- -ACCUGGUCCACGAGUCAUCGUCUGAG- -5'
28733 3' -55.4 NC_006146.1 + 123709 0.76 0.414716
Target:  5'- gGGGCCuGGcGCUCGGggcggcGGCGGGCUCu -3'
miRNA:   3'- aCCUGGuCCaCGAGUCa-----UCGUCUGAG- -5'
28733 3' -55.4 NC_006146.1 + 125730 0.76 0.414716
Target:  5'- gGaGGCCAGGUGCUCaaAGgaccAGCGGGCUUg -3'
miRNA:   3'- aC-CUGGUCCACGAG--UCa---UCGUCUGAG- -5'
28733 3' -55.4 NC_006146.1 + 44557 0.73 0.568364
Target:  5'- gGGGCCGGG-GCUCcgGGUGGCuGGCg- -3'
miRNA:   3'- aCCUGGUCCaCGAG--UCAUCGuCUGag -5'
28733 3' -55.4 NC_006146.1 + 67908 0.72 0.639465
Target:  5'- cUGGGCCucgugggagccgaAGGUGCUCAGgaaccaccgGGCAGAgaCg -3'
miRNA:   3'- -ACCUGG-------------UCCACGAGUCa--------UCGUCUgaG- -5'
28733 3' -55.4 NC_006146.1 + 50170 0.72 0.650841
Target:  5'- aGGACCAGGgggGCguuugCAcuuGcGGCGGGCUCg -3'
miRNA:   3'- aCCUGGUCCa--CGa----GU---CaUCGUCUGAG- -5'
28733 3' -55.4 NC_006146.1 + 149977 0.71 0.661168
Target:  5'- gGGGCCAGG-GCcugCAGgucGGCcGGACUCa -3'
miRNA:   3'- aCCUGGUCCaCGa--GUCa--UCG-UCUGAG- -5'
28733 3' -55.4 NC_006146.1 + 99599 0.71 0.67147
Target:  5'- gGGGCCGcGGUGCUCugcGUAGCAcgaGGCg- -3'
miRNA:   3'- aCCUGGU-CCACGAGu--CAUCGU---CUGag -5'
28733 3' -55.4 NC_006146.1 + 51660 0.71 0.67147
Target:  5'- gGGGCCAGG-GC-CGGU-GCcgGGACUCa -3'
miRNA:   3'- aCCUGGUCCaCGaGUCAuCG--UCUGAG- -5'
28733 3' -55.4 NC_006146.1 + 148888 0.71 0.691968
Target:  5'- gGGACCGGGUGUUgggaccUGGUGGCGcccgccGGCUCc -3'
miRNA:   3'- aCCUGGUCCACGA------GUCAUCGU------CUGAG- -5'
28733 3' -55.4 NC_006146.1 + 151966 0.71 0.691968
Target:  5'- gGGACCGGGUGUUgggaccUGGUGGCGcccgccGGCUCc -3'
miRNA:   3'- aCCUGGUCCACGA------GUCAUCGU------CUGAG- -5'
28733 3' -55.4 NC_006146.1 + 155044 0.71 0.691968
Target:  5'- gGGACCGGGUGUUgggaccUGGUGGCGcccgccGGCUCc -3'
miRNA:   3'- aCCUGGUCCACGA------GUCAUCGU------CUGAG- -5'
28733 3' -55.4 NC_006146.1 + 158123 0.71 0.691968
Target:  5'- gGGACCGGGUGUUgggaccUGGUGGCGcccgccGGCUCc -3'
miRNA:   3'- aCCUGGUCCACGA------GUCAUCGU------CUGAG- -5'
28733 3' -55.4 NC_006146.1 + 142732 0.71 0.691968
Target:  5'- gGGACCGGGUGUUgggaccUGGUGGCGcccgccGGCUCc -3'
miRNA:   3'- aCCUGGUCCACGA------GUCAUCGU------CUGAG- -5'
28733 3' -55.4 NC_006146.1 + 145810 0.71 0.691968
Target:  5'- gGGACCGGGUGUUgggaccUGGUGGCGcccgccGGCUCc -3'
miRNA:   3'- aCCUGGUCCACGA------GUCAUCGU------CUGAG- -5'
28733 3' -55.4 NC_006146.1 + 8437 0.7 0.712262
Target:  5'- gGGACCAGGagaGCUCGGgGGCGaGCUg -3'
miRNA:   3'- aCCUGGUCCa--CGAGUCaUCGUcUGAg -5'
28733 3' -55.4 NC_006146.1 + 51447 0.7 0.751937
Target:  5'- gGGACCAcgcGGcagaacUGCUC-GUAGCAGcGCUCg -3'
miRNA:   3'- aCCUGGU---CC------ACGAGuCAUCGUC-UGAG- -5'
28733 3' -55.4 NC_006146.1 + 59251 0.7 0.751937
Target:  5'- aUGGGCCuGGGUGUUCAGggccUGGCcGACg- -3'
miRNA:   3'- -ACCUGG-UCCACGAGUC----AUCGuCUGag -5'
28733 3' -55.4 NC_006146.1 + 103580 0.69 0.789887
Target:  5'- cGGGCCuGGgccggGCUCAGc-GCGGACg- -3'
miRNA:   3'- aCCUGGuCCa----CGAGUCauCGUCUGag -5'
28733 3' -55.4 NC_006146.1 + 127089 0.69 0.789887
Target:  5'- aGGGCCAGG-GCggagCGGUGGgaCAGGCa- -3'
miRNA:   3'- aCCUGGUCCaCGa---GUCAUC--GUCUGag -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.